Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11960 and ABZR87_RS11965 are separated by 154 nucleotides ABZR87_RS11965 and ABZR87_RS11970 are separated by 123 nucleotides ABZR87_RS11970 and ABZR87_RS11975 overlap by 26 nucleotides
ABZR87_RS11960: ABZR87_RS11960 - DMT family transporter, at 2,538,947 to 2,539,891
_RS11960
ABZR87_RS11965: ABZR87_RS11965 - IMP dehydrogenase, at 2,540,046 to 2,541,509
_RS11965
ABZR87_RS11970: ABZR87_RS11970 - hypothetical protein, at 2,541,633 to 2,542,211
_RS11970
ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805
_RS11975
Position (kb)
2540
2541
2542 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2539.050 kb on + strand, within ABZR87_RS11960 at 2539.051 kb on - strand, within ABZR87_RS11960 at 2539.051 kb on - strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.062 kb on + strand, within ABZR87_RS11960 at 2539.063 kb on - strand, within ABZR87_RS11960 at 2539.063 kb on - strand, within ABZR87_RS11960 at 2539.300 kb on - strand, within ABZR87_RS11960 at 2539.300 kb on - strand, within ABZR87_RS11960 at 2539.300 kb on - strand, within ABZR87_RS11960 at 2539.300 kb on - strand, within ABZR87_RS11960 at 2539.300 kb on - strand, within ABZR87_RS11960 at 2539.301 kb on + strand, within ABZR87_RS11960 at 2539.301 kb on + strand, within ABZR87_RS11960 at 2539.301 kb on + strand, within ABZR87_RS11960 at 2539.301 kb on + strand, within ABZR87_RS11960 at 2539.301 kb on + strand, within ABZR87_RS11960 at 2539.302 kb on - strand, within ABZR87_RS11960 at 2539.302 kb on - strand, within ABZR87_RS11960 at 2539.302 kb on - strand, within ABZR87_RS11960 at 2539.302 kb on - strand, within ABZR87_RS11960 at 2539.302 kb on - strand, within ABZR87_RS11960 at 2539.302 kb on - strand, within ABZR87_RS11960 at 2539.314 kb on + strand, within ABZR87_RS11960 at 2539.369 kb on - strand, within ABZR87_RS11960 at 2539.369 kb on - strand, within ABZR87_RS11960 at 2539.369 kb on - strand, within ABZR87_RS11960 at 2539.649 kb on + strand, within ABZR87_RS11960 at 2539.649 kb on + strand, within ABZR87_RS11960 at 2539.649 kb on + strand, within ABZR87_RS11960 at 2539.649 kb on + strand, within ABZR87_RS11960 at 2539.653 kb on + strand, within ABZR87_RS11960 at 2539.653 kb on + strand, within ABZR87_RS11960 at 2539.653 kb on + strand, within ABZR87_RS11960 at 2539.653 kb on + strand, within ABZR87_RS11960 at 2539.653 kb on + strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.654 kb on - strand, within ABZR87_RS11960 at 2539.656 kb on + strand, within ABZR87_RS11960 at 2539.656 kb on + strand, within ABZR87_RS11960 at 2539.656 kb on + strand, within ABZR87_RS11960 at 2539.657 kb on - strand, within ABZR87_RS11960 at 2539.657 kb on - strand, within ABZR87_RS11960 at 2539.657 kb on - strand, within ABZR87_RS11960 at 2539.657 kb on - strand, within ABZR87_RS11960 at 2539.712 kb on + strand, within ABZR87_RS11960 at 2539.713 kb on - strand, within ABZR87_RS11960 at 2539.713 kb on - strand, within ABZR87_RS11960 at 2539.771 kb on - strand, within ABZR87_RS11960 at 2539.780 kb on - strand, within ABZR87_RS11960 at 2539.877 kb on + strand at 2539.878 kb on - strand at 2539.878 kb on - strand at 2539.878 kb on - strand at 2539.878 kb on - strand at 2539.878 kb on - strand at 2539.878 kb on - strand at 2539.878 kb on - strand at 2539.977 kb on + strand at 2539.978 kb on - strand at 2539.990 kb on + strand at 2541.536 kb on + strand at 2541.536 kb on + strand at 2541.536 kb on + strand at 2541.550 kb on + strand at 2541.550 kb on + strand at 2541.765 kb on + strand, within ABZR87_RS11970 at 2542.116 kb on + strand, within ABZR87_RS11970
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,539,050 + ABZR87_RS11960 0.11 -1.5 2,539,051 - ABZR87_RS11960 0.11 +1.2 2,539,051 - ABZR87_RS11960 0.11 -0.6 2,539,062 + ABZR87_RS11960 0.12 +0.8 2,539,062 + ABZR87_RS11960 0.12 +1.4 2,539,062 + ABZR87_RS11960 0.12 +2.4 2,539,062 + ABZR87_RS11960 0.12 -1.0 2,539,062 + ABZR87_RS11960 0.12 +0.1 2,539,062 + ABZR87_RS11960 0.12 -2.4 2,539,062 + ABZR87_RS11960 0.12 -1.0 2,539,063 - ABZR87_RS11960 0.12 -2.0 2,539,063 - ABZR87_RS11960 0.12 +0.8 2,539,300 - ABZR87_RS11960 0.37 +1.5 2,539,300 - ABZR87_RS11960 0.37 -2.2 2,539,300 - ABZR87_RS11960 0.37 -1.4 2,539,300 - ABZR87_RS11960 0.37 +1.2 2,539,300 - ABZR87_RS11960 0.37 -1.8 2,539,301 + ABZR87_RS11960 0.37 +0.1 2,539,301 + ABZR87_RS11960 0.37 -0.7 2,539,301 + ABZR87_RS11960 0.37 +0.3 2,539,301 + ABZR87_RS11960 0.37 +2.1 2,539,301 + ABZR87_RS11960 0.37 +1.6 2,539,302 - ABZR87_RS11960 0.38 -2.0 2,539,302 - ABZR87_RS11960 0.38 +0.4 2,539,302 - ABZR87_RS11960 0.38 +0.7 2,539,302 - ABZR87_RS11960 0.38 +1.8 2,539,302 - ABZR87_RS11960 0.38 -0.3 2,539,302 - ABZR87_RS11960 0.38 -0.3 2,539,314 + ABZR87_RS11960 0.39 -2.0 2,539,369 - ABZR87_RS11960 0.45 -2.1 2,539,369 - ABZR87_RS11960 0.45 -3.2 2,539,369 - ABZR87_RS11960 0.45 -2.3 2,539,649 + ABZR87_RS11960 0.74 +0.2 2,539,649 + ABZR87_RS11960 0.74 -1.2 2,539,649 + ABZR87_RS11960 0.74 +0.8 2,539,649 + ABZR87_RS11960 0.74 +0.7 2,539,653 + ABZR87_RS11960 0.75 -1.3 2,539,653 + ABZR87_RS11960 0.75 +0.8 2,539,653 + ABZR87_RS11960 0.75 -2.5 2,539,653 + ABZR87_RS11960 0.75 -2.1 2,539,653 + ABZR87_RS11960 0.75 -1.1 2,539,654 - ABZR87_RS11960 0.75 -1.1 2,539,654 - ABZR87_RS11960 0.75 -2.4 2,539,654 - ABZR87_RS11960 0.75 +1.7 2,539,654 - ABZR87_RS11960 0.75 +0.2 2,539,654 - ABZR87_RS11960 0.75 +0.7 2,539,654 - ABZR87_RS11960 0.75 -0.5 2,539,654 - ABZR87_RS11960 0.75 -0.2 2,539,654 - ABZR87_RS11960 0.75 -1.4 2,539,654 - ABZR87_RS11960 0.75 -1.4 2,539,654 - ABZR87_RS11960 0.75 +0.4 2,539,656 + ABZR87_RS11960 0.75 +1.4 2,539,656 + ABZR87_RS11960 0.75 -0.3 2,539,656 + ABZR87_RS11960 0.75 +0.9 2,539,657 - ABZR87_RS11960 0.75 +1.0 2,539,657 - ABZR87_RS11960 0.75 +0.3 2,539,657 - ABZR87_RS11960 0.75 +0.2 2,539,657 - ABZR87_RS11960 0.75 -0.8 2,539,712 + ABZR87_RS11960 0.81 +0.6 2,539,713 - ABZR87_RS11960 0.81 -0.1 2,539,713 - ABZR87_RS11960 0.81 +1.6 2,539,771 - ABZR87_RS11960 0.87 -1.4 2,539,780 - ABZR87_RS11960 0.88 -3.0 2,539,877 + -0.5 2,539,878 - +0.8 2,539,878 - +0.1 2,539,878 - +0.2 2,539,878 - +1.1 2,539,878 - -1.2 2,539,878 - -0.4 2,539,878 - -1.5 2,539,977 + -0.9 2,539,978 - -0.5 2,539,990 + +4.6 2,541,536 + -2.9 2,541,536 + +0.7 2,541,536 + -2.3 2,541,550 + -1.8 2,541,550 + +1.3 2,541,765 + ABZR87_RS11970 0.23 +1.8 2,542,116 + ABZR87_RS11970 0.83 -1.7
Or see this region's nucleotide sequence