Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11860

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11855 and ABZR87_RS11860 are separated by 86 nucleotidesABZR87_RS11860 and ABZR87_RS11865 are separated by 115 nucleotides ABZR87_RS11855: ABZR87_RS11855 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 2,517,242 to 2,518,432 _RS11855 ABZR87_RS11860: ABZR87_RS11860 - RIP metalloprotease RseP, at 2,518,519 to 2,519,907 _RS11860 ABZR87_RS11865: ABZR87_RS11865 - outer membrane protein assembly factor BamA, at 2,520,023 to 2,522,320 _RS11865 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2518.396 kb on + strandat 2518.396 kb on + strandat 2518.407 kb on + strandat 2518.407 kb on + strandat 2518.407 kb on + strandat 2518.408 kb on - strandat 2518.457 kb on + strandat 2518.462 kb on + strandat 2518.462 kb on + strandat 2518.462 kb on + strandat 2518.463 kb on - strandat 2518.533 kb on - strandat 2518.533 kb on - strandat 2518.556 kb on + strandat 2518.556 kb on + strandat 2518.557 kb on - strandat 2518.585 kb on + strandat 2518.585 kb on + strandat 2518.585 kb on + strandat 2518.585 kb on + strandat 2518.586 kb on - strandat 2518.586 kb on - strandat 2518.662 kb on - strand, within ABZR87_RS11860at 2518.662 kb on - strand, within ABZR87_RS11860at 2518.718 kb on - strand, within ABZR87_RS11860at 2518.813 kb on + strand, within ABZR87_RS11860at 2518.813 kb on + strand, within ABZR87_RS11860at 2518.814 kb on - strand, within ABZR87_RS11860at 2518.814 kb on - strand, within ABZR87_RS11860at 2518.877 kb on - strand, within ABZR87_RS11860at 2519.053 kb on + strand, within ABZR87_RS11860at 2519.118 kb on + strand, within ABZR87_RS11860at 2519.154 kb on + strand, within ABZR87_RS11860at 2519.385 kb on + strand, within ABZR87_RS11860at 2519.385 kb on + strand, within ABZR87_RS11860at 2519.386 kb on - strand, within ABZR87_RS11860at 2519.386 kb on - strand, within ABZR87_RS11860at 2519.761 kb on + strand, within ABZR87_RS11860at 2519.869 kb on + strandat 2519.912 kb on + strandat 2520.011 kb on + strandat 2520.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,518,396 + -2.4
2,518,396 + +0.7
2,518,407 + +0.4
2,518,407 + -0.7
2,518,407 + +1.5
2,518,408 - +0.8
2,518,457 + +0.1
2,518,462 + +1.6
2,518,462 + -3.7
2,518,462 + -2.8
2,518,463 - -0.3
2,518,533 - +1.6
2,518,533 - +2.0
2,518,556 + +1.3
2,518,556 + +0.9
2,518,557 - -0.1
2,518,585 + +0.7
2,518,585 + +2.5
2,518,585 + +0.5
2,518,585 + +0.9
2,518,586 - +3.4
2,518,586 - +1.9
2,518,662 - ABZR87_RS11860 0.10 +0.9
2,518,662 - ABZR87_RS11860 0.10 -0.3
2,518,718 - ABZR87_RS11860 0.14 +3.8
2,518,813 + ABZR87_RS11860 0.21 +0.4
2,518,813 + ABZR87_RS11860 0.21 +1.7
2,518,814 - ABZR87_RS11860 0.21 +1.1
2,518,814 - ABZR87_RS11860 0.21 -0.3
2,518,877 - ABZR87_RS11860 0.26 +0.7
2,519,053 + ABZR87_RS11860 0.38 +3.8
2,519,118 + ABZR87_RS11860 0.43 +1.7
2,519,154 + ABZR87_RS11860 0.46 -0.6
2,519,385 + ABZR87_RS11860 0.62 +0.8
2,519,385 + ABZR87_RS11860 0.62 +0.6
2,519,386 - ABZR87_RS11860 0.62 +0.8
2,519,386 - ABZR87_RS11860 0.62 -2.0
2,519,761 + ABZR87_RS11860 0.89 -0.4
2,519,869 + +0.2
2,519,912 + +1.6
2,520,011 + +1.7
2,520,011 + -1.9

Or see this region's nucleotide sequence