Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11215

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11210 and ABZR87_RS11215 are separated by 129 nucleotidesABZR87_RS11215 and ABZR87_RS11220 are separated by 2 nucleotides ABZR87_RS11210: ABZR87_RS11210 - translation initiation factor IF-2, at 2,378,506 to 2,381,400 _RS11210 ABZR87_RS11215: ABZR87_RS11215 - 30S ribosome-binding factor RbfA, at 2,381,530 to 2,381,901 _RS11215 ABZR87_RS11220: ABZR87_RS11220 - tRNA pseudouridine(55) synthase TruB, at 2,381,904 to 2,382,860 _RS11220 Position (kb) 2381 2382Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2381.398 kb on + strandat 2381.398 kb on + strandat 2381.398 kb on + strandat 2381.399 kb on - strandat 2381.399 kb on - strandat 2381.399 kb on - strandat 2381.402 kb on - strandat 2381.402 kb on - strandat 2381.529 kb on + strandat 2382.061 kb on + strand, within ABZR87_RS11220at 2382.147 kb on + strand, within ABZR87_RS11220at 2382.147 kb on + strand, within ABZR87_RS11220at 2382.148 kb on - strand, within ABZR87_RS11220at 2382.170 kb on + strand, within ABZR87_RS11220at 2382.183 kb on - strand, within ABZR87_RS11220at 2382.183 kb on - strand, within ABZR87_RS11220at 2382.330 kb on + strand, within ABZR87_RS11220at 2382.331 kb on - strand, within ABZR87_RS11220at 2382.337 kb on - strand, within ABZR87_RS11220at 2382.437 kb on + strand, within ABZR87_RS11220at 2382.437 kb on + strand, within ABZR87_RS11220at 2382.437 kb on + strand, within ABZR87_RS11220at 2382.437 kb on + strand, within ABZR87_RS11220at 2382.438 kb on - strand, within ABZR87_RS11220at 2382.438 kb on - strand, within ABZR87_RS11220at 2382.468 kb on + strand, within ABZR87_RS11220at 2382.468 kb on + strand, within ABZR87_RS11220at 2382.469 kb on - strand, within ABZR87_RS11220at 2382.858 kb on + strandat 2382.859 kb on - strandat 2382.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,381,398 + +1.9
2,381,398 + +0.3
2,381,398 + +2.2
2,381,399 - +3.6
2,381,399 - -2.1
2,381,399 - -1.6
2,381,402 - -1.8
2,381,402 - -1.5
2,381,529 + -1.4
2,382,061 + ABZR87_RS11220 0.16 +1.0
2,382,147 + ABZR87_RS11220 0.25 -1.3
2,382,147 + ABZR87_RS11220 0.25 -0.1
2,382,148 - ABZR87_RS11220 0.25 -0.8
2,382,170 + ABZR87_RS11220 0.28 -2.4
2,382,183 - ABZR87_RS11220 0.29 -3.4
2,382,183 - ABZR87_RS11220 0.29 -3.0
2,382,330 + ABZR87_RS11220 0.45 -1.8
2,382,331 - ABZR87_RS11220 0.45 -1.6
2,382,337 - ABZR87_RS11220 0.45 -0.3
2,382,437 + ABZR87_RS11220 0.56 -2.5
2,382,437 + ABZR87_RS11220 0.56 -0.6
2,382,437 + ABZR87_RS11220 0.56 -2.2
2,382,437 + ABZR87_RS11220 0.56 -2.1
2,382,438 - ABZR87_RS11220 0.56 +0.0
2,382,438 - ABZR87_RS11220 0.56 -1.0
2,382,468 + ABZR87_RS11220 0.59 -1.2
2,382,468 + ABZR87_RS11220 0.59 -0.3
2,382,469 - ABZR87_RS11220 0.59 +0.8
2,382,858 + +1.7
2,382,859 - +0.8
2,382,859 - +2.9

Or see this region's nucleotide sequence