Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11205 and ABZR87_RS11210 are separated by 62 nucleotides ABZR87_RS11210 and ABZR87_RS11215 are separated by 129 nucleotides ABZR87_RS11215 and ABZR87_RS11220 are separated by 2 nucleotides
ABZR87_RS11205: ABZR87_RS11205 - transcription termination factor NusA, at 2,376,968 to 2,378,443
_RS11205
ABZR87_RS11210: ABZR87_RS11210 - translation initiation factor IF-2, at 2,378,506 to 2,381,400
_RS11210
ABZR87_RS11215: ABZR87_RS11215 - 30S ribosome-binding factor RbfA, at 2,381,530 to 2,381,901
_RS11215
ABZR87_RS11220: ABZR87_RS11220 - tRNA pseudouridine(55) synthase TruB, at 2,381,904 to 2,382,860
_RS11220
Position (kb)
2378
2379
2380
2381
2382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2378.450 kb on + strand at 2378.465 kb on + strand at 2381.398 kb on + strand at 2381.398 kb on + strand at 2381.398 kb on + strand at 2381.399 kb on - strand at 2381.399 kb on - strand at 2381.399 kb on - strand at 2381.402 kb on - strand at 2381.402 kb on - strand at 2381.529 kb on + strand at 2382.061 kb on + strand, within ABZR87_RS11220 at 2382.147 kb on + strand, within ABZR87_RS11220 at 2382.147 kb on + strand, within ABZR87_RS11220 at 2382.148 kb on - strand, within ABZR87_RS11220 at 2382.170 kb on + strand, within ABZR87_RS11220 at 2382.183 kb on - strand, within ABZR87_RS11220 at 2382.183 kb on - strand, within ABZR87_RS11220 at 2382.330 kb on + strand, within ABZR87_RS11220 at 2382.331 kb on - strand, within ABZR87_RS11220 at 2382.337 kb on - strand, within ABZR87_RS11220
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,378,450 + +0.3 2,378,465 + +0.0 2,381,398 + +1.9 2,381,398 + +0.3 2,381,398 + +2.2 2,381,399 - +3.6 2,381,399 - -2.1 2,381,399 - -1.6 2,381,402 - -1.8 2,381,402 - -1.5 2,381,529 + -1.4 2,382,061 + ABZR87_RS11220 0.16 +1.0 2,382,147 + ABZR87_RS11220 0.25 -1.3 2,382,147 + ABZR87_RS11220 0.25 -0.1 2,382,148 - ABZR87_RS11220 0.25 -0.8 2,382,170 + ABZR87_RS11220 0.28 -2.4 2,382,183 - ABZR87_RS11220 0.29 -3.4 2,382,183 - ABZR87_RS11220 0.29 -3.0 2,382,330 + ABZR87_RS11220 0.45 -1.8 2,382,331 - ABZR87_RS11220 0.45 -1.6 2,382,337 - ABZR87_RS11220 0.45 -0.3
Or see this region's nucleotide sequence