Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11120

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11115 and ABZR87_RS11120 are separated by 187 nucleotidesABZR87_RS11120 and ABZR87_RS11125 are separated by 101 nucleotides ABZR87_RS11115: ABZR87_RS11115 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 2,358,183 to 2,359,442 _RS11115 ABZR87_RS11120: ABZR87_RS11120 - dihydrolipoyl dehydrogenase, at 2,359,630 to 2,361,066 _RS11120 ABZR87_RS11125: ABZR87_RS11125 - cell division protein ZapE, at 2,361,168 to 2,362,265 _RS11125 Position (kb) 2359 2360 2361 2362Strain fitness (log2 ratio) -3 -2 -1 0 1at 2359.458 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.504 kb on + strandat 2359.573 kb on + strandat 2359.574 kb on - strandat 2361.060 kb on + strandat 2361.060 kb on + strandat 2361.060 kb on + strandat 2361.064 kb on + strandat 2361.065 kb on - strandat 2361.186 kb on + strandat 2361.187 kb on - strandat 2361.187 kb on - strandat 2361.190 kb on + strandat 2361.191 kb on - strandat 2361.191 kb on - strandat 2361.213 kb on + strandat 2361.348 kb on + strand, within ABZR87_RS11125at 2361.349 kb on - strand, within ABZR87_RS11125at 2361.349 kb on - strand, within ABZR87_RS11125at 2361.399 kb on + strand, within ABZR87_RS11125at 2361.399 kb on + strand, within ABZR87_RS11125at 2361.399 kb on + strand, within ABZR87_RS11125at 2361.400 kb on - strand, within ABZR87_RS11125at 2361.400 kb on - strand, within ABZR87_RS11125at 2361.400 kb on - strand, within ABZR87_RS11125at 2361.400 kb on - strand, within ABZR87_RS11125at 2361.400 kb on - strand, within ABZR87_RS11125at 2361.400 kb on - strand, within ABZR87_RS11125at 2361.401 kb on + strand, within ABZR87_RS11125at 2361.402 kb on - strand, within ABZR87_RS11125at 2361.402 kb on - strand, within ABZR87_RS11125at 2361.795 kb on + strand, within ABZR87_RS11125at 2361.796 kb on - strand, within ABZR87_RS11125at 2361.796 kb on - strand, within ABZR87_RS11125at 2361.796 kb on - strand, within ABZR87_RS11125at 2361.796 kb on - strand, within ABZR87_RS11125at 2361.798 kb on + strand, within ABZR87_RS11125at 2361.799 kb on - strand, within ABZR87_RS11125at 2361.799 kb on - strand, within ABZR87_RS11125at 2361.845 kb on + strand, within ABZR87_RS11125at 2361.846 kb on + strand, within ABZR87_RS11125at 2361.917 kb on + strand, within ABZR87_RS11125at 2361.984 kb on + strand, within ABZR87_RS11125

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,359,458 + -0.3
2,359,504 + -3.6
2,359,504 + -0.3
2,359,504 + -2.3
2,359,504 + -1.0
2,359,504 + -0.8
2,359,504 + -0.1
2,359,504 + -0.1
2,359,573 + -1.9
2,359,574 - +0.2
2,361,060 + -2.4
2,361,060 + +1.1
2,361,060 + -1.9
2,361,064 + +0.7
2,361,065 - -0.5
2,361,186 + +0.6
2,361,187 - -1.6
2,361,187 - -1.5
2,361,190 + -1.6
2,361,191 - +0.1
2,361,191 - +1.2
2,361,213 + -0.9
2,361,348 + ABZR87_RS11125 0.16 +0.2
2,361,349 - ABZR87_RS11125 0.16 -1.3
2,361,349 - ABZR87_RS11125 0.16 -1.0
2,361,399 + ABZR87_RS11125 0.21 -1.1
2,361,399 + ABZR87_RS11125 0.21 -1.1
2,361,399 + ABZR87_RS11125 0.21 -1.1
2,361,400 - ABZR87_RS11125 0.21 -2.5
2,361,400 - ABZR87_RS11125 0.21 +1.0
2,361,400 - ABZR87_RS11125 0.21 -0.0
2,361,400 - ABZR87_RS11125 0.21 -0.4
2,361,400 - ABZR87_RS11125 0.21 -2.1
2,361,400 - ABZR87_RS11125 0.21 -2.3
2,361,401 + ABZR87_RS11125 0.21 -2.4
2,361,402 - ABZR87_RS11125 0.21 -2.1
2,361,402 - ABZR87_RS11125 0.21 -2.0
2,361,795 + ABZR87_RS11125 0.57 -1.3
2,361,796 - ABZR87_RS11125 0.57 -0.4
2,361,796 - ABZR87_RS11125 0.57 -1.3
2,361,796 - ABZR87_RS11125 0.57 -1.1
2,361,796 - ABZR87_RS11125 0.57 -0.4
2,361,798 + ABZR87_RS11125 0.57 +0.2
2,361,799 - ABZR87_RS11125 0.57 +0.9
2,361,799 - ABZR87_RS11125 0.57 -1.1
2,361,845 + ABZR87_RS11125 0.62 -1.1
2,361,846 + ABZR87_RS11125 0.62 -3.4
2,361,917 + ABZR87_RS11125 0.68 -0.0
2,361,984 + ABZR87_RS11125 0.74 -1.0

Or see this region's nucleotide sequence