Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10755

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10745 and ABZR87_RS10750 overlap by 4 nucleotidesABZR87_RS10750 and ABZR87_RS10755 are separated by 61 nucleotidesABZR87_RS10755 and ABZR87_RS10760 are separated by 378 nucleotides ABZR87_RS10745: ABZR87_RS10745 - hypothetical protein, at 2,273,479 to 2,274,036 _RS10745 ABZR87_RS10750: ABZR87_RS10750 - zinc-dependent peptidase, at 2,274,033 to 2,274,899 _RS10750 ABZR87_RS10755: ABZR87_RS10755 - response regulator transcription factor, at 2,274,961 to 2,275,629 _RS10755 ABZR87_RS10760: ABZR87_RS10760 - hypothetical protein, at 2,276,008 to 2,276,685 _RS10760 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2273.997 kb on + strandat 2274.097 kb on + strandat 2274.097 kb on + strandat 2274.097 kb on + strandat 2274.118 kb on + strandat 2274.118 kb on + strandat 2274.119 kb on - strandat 2274.212 kb on - strand, within ABZR87_RS10750at 2274.212 kb on - strand, within ABZR87_RS10750at 2274.292 kb on + strand, within ABZR87_RS10750at 2274.292 kb on + strand, within ABZR87_RS10750at 2274.427 kb on + strand, within ABZR87_RS10750at 2274.427 kb on + strand, within ABZR87_RS10750at 2274.427 kb on + strand, within ABZR87_RS10750at 2274.427 kb on + strand, within ABZR87_RS10750at 2274.428 kb on - strand, within ABZR87_RS10750at 2274.428 kb on - strand, within ABZR87_RS10750at 2274.428 kb on - strand, within ABZR87_RS10750at 2274.428 kb on - strand, within ABZR87_RS10750at 2274.592 kb on + strand, within ABZR87_RS10750at 2274.620 kb on - strand, within ABZR87_RS10750at 2274.857 kb on + strandat 2274.857 kb on + strandat 2274.908 kb on + strandat 2274.908 kb on + strandat 2274.908 kb on + strandat 2274.908 kb on + strandat 2274.908 kb on + strandat 2274.908 kb on + strandat 2274.909 kb on - strandat 2274.909 kb on - strandat 2274.909 kb on - strandat 2274.909 kb on - strandat 2274.909 kb on - strandat 2274.909 kb on - strandat 2274.909 kb on - strandat 2274.910 kb on + strandat 2275.004 kb on + strandat 2275.004 kb on + strandat 2275.004 kb on + strandat 2275.004 kb on + strandat 2275.004 kb on + strandat 2275.004 kb on + strandat 2275.004 kb on + strandat 2275.005 kb on - strandat 2275.005 kb on - strandat 2275.005 kb on - strandat 2275.005 kb on - strandat 2275.005 kb on - strandat 2275.005 kb on - strandat 2275.043 kb on + strand, within ABZR87_RS10755at 2275.057 kb on - strand, within ABZR87_RS10755at 2275.057 kb on - strand, within ABZR87_RS10755at 2275.083 kb on + strand, within ABZR87_RS10755at 2275.083 kb on + strand, within ABZR87_RS10755at 2275.083 kb on + strand, within ABZR87_RS10755at 2275.083 kb on + strand, within ABZR87_RS10755at 2275.084 kb on - strand, within ABZR87_RS10755at 2275.084 kb on - strand, within ABZR87_RS10755at 2275.145 kb on + strand, within ABZR87_RS10755at 2275.146 kb on - strand, within ABZR87_RS10755at 2275.210 kb on - strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.259 kb on + strand, within ABZR87_RS10755at 2275.260 kb on - strand, within ABZR87_RS10755at 2275.260 kb on - strand, within ABZR87_RS10755at 2275.260 kb on - strand, within ABZR87_RS10755at 2275.260 kb on - strand, within ABZR87_RS10755at 2275.260 kb on - strand, within ABZR87_RS10755at 2275.570 kb on + strandat 2275.590 kb on + strandat 2275.590 kb on + strandat 2275.591 kb on - strandat 2275.591 kb on - strandat 2275.591 kb on - strandat 2275.591 kb on - strandat 2275.684 kb on + strandat 2275.684 kb on + strandat 2275.684 kb on + strandat 2275.684 kb on + strandat 2275.685 kb on - strandat 2275.685 kb on - strandat 2275.719 kb on + strandat 2275.792 kb on + strandat 2275.792 kb on + strandat 2275.793 kb on - strandat 2275.793 kb on - strandat 2275.793 kb on - strandat 2275.862 kb on - strandat 2275.937 kb on - strandat 2275.945 kb on - strandat 2275.983 kb on + strandat 2275.984 kb on - strandat 2275.984 kb on - strandat 2276.124 kb on - strand, within ABZR87_RS10760at 2276.124 kb on - strand, within ABZR87_RS10760at 2276.190 kb on + strand, within ABZR87_RS10760at 2276.190 kb on + strand, within ABZR87_RS10760at 2276.191 kb on - strand, within ABZR87_RS10760at 2276.290 kb on - strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.363 kb on + strand, within ABZR87_RS10760at 2276.364 kb on - strand, within ABZR87_RS10760at 2276.364 kb on - strand, within ABZR87_RS10760at 2276.364 kb on - strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.365 kb on + strand, within ABZR87_RS10760at 2276.366 kb on - strand, within ABZR87_RS10760at 2276.366 kb on - strand, within ABZR87_RS10760at 2276.366 kb on - strand, within ABZR87_RS10760at 2276.366 kb on - strand, within ABZR87_RS10760at 2276.366 kb on - strand, within ABZR87_RS10760at 2276.422 kb on - strand, within ABZR87_RS10760at 2276.547 kb on + strand, within ABZR87_RS10760at 2276.612 kb on + strand, within ABZR87_RS10760at 2276.613 kb on - strand, within ABZR87_RS10760at 2276.613 kb on - strand, within ABZR87_RS10760

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,273,997 + +0.5
2,274,097 + +3.0
2,274,097 + +0.5
2,274,097 + +0.8
2,274,118 + +0.5
2,274,118 + +0.1
2,274,119 - -3.0
2,274,212 - ABZR87_RS10750 0.21 -0.6
2,274,212 - ABZR87_RS10750 0.21 +2.1
2,274,292 + ABZR87_RS10750 0.30 -3.7
2,274,292 + ABZR87_RS10750 0.30 -2.3
2,274,427 + ABZR87_RS10750 0.45 +0.4
2,274,427 + ABZR87_RS10750 0.45 -2.0
2,274,427 + ABZR87_RS10750 0.45 -1.6
2,274,427 + ABZR87_RS10750 0.45 +1.2
2,274,428 - ABZR87_RS10750 0.46 -0.6
2,274,428 - ABZR87_RS10750 0.46 -0.2
2,274,428 - ABZR87_RS10750 0.46 +0.0
2,274,428 - ABZR87_RS10750 0.46 +0.7
2,274,592 + ABZR87_RS10750 0.64 +0.7
2,274,620 - ABZR87_RS10750 0.68 +2.0
2,274,857 + +1.6
2,274,857 + -2.4
2,274,908 + -0.6
2,274,908 + +0.8
2,274,908 + +0.4
2,274,908 + -0.5
2,274,908 + -2.6
2,274,908 + +0.0
2,274,909 - -1.2
2,274,909 - +0.3
2,274,909 - +1.7
2,274,909 - +1.5
2,274,909 - -1.4
2,274,909 - +0.4
2,274,909 - +0.6
2,274,910 + -2.2
2,275,004 + -0.2
2,275,004 + +0.1
2,275,004 + -1.7
2,275,004 + -0.1
2,275,004 + +0.6
2,275,004 + +0.8
2,275,004 + +1.7
2,275,005 - +0.7
2,275,005 - -1.0
2,275,005 - +2.3
2,275,005 - +2.0
2,275,005 - -1.4
2,275,005 - +0.8
2,275,043 + ABZR87_RS10755 0.12 +2.4
2,275,057 - ABZR87_RS10755 0.14 +1.1
2,275,057 - ABZR87_RS10755 0.14 +2.4
2,275,083 + ABZR87_RS10755 0.18 -0.4
2,275,083 + ABZR87_RS10755 0.18 +1.8
2,275,083 + ABZR87_RS10755 0.18 +0.5
2,275,083 + ABZR87_RS10755 0.18 -1.5
2,275,084 - ABZR87_RS10755 0.18 +0.0
2,275,084 - ABZR87_RS10755 0.18 +1.8
2,275,145 + ABZR87_RS10755 0.28 +2.8
2,275,146 - ABZR87_RS10755 0.28 -0.4
2,275,210 - ABZR87_RS10755 0.37 +1.3
2,275,259 + ABZR87_RS10755 0.45 +0.2
2,275,259 + ABZR87_RS10755 0.45 -1.1
2,275,259 + ABZR87_RS10755 0.45 -0.6
2,275,259 + ABZR87_RS10755 0.45 -0.1
2,275,259 + ABZR87_RS10755 0.45 +1.3
2,275,259 + ABZR87_RS10755 0.45 -1.9
2,275,259 + ABZR87_RS10755 0.45 +1.7
2,275,260 - ABZR87_RS10755 0.45 -0.9
2,275,260 - ABZR87_RS10755 0.45 +2.2
2,275,260 - ABZR87_RS10755 0.45 +1.4
2,275,260 - ABZR87_RS10755 0.45 -0.4
2,275,260 - ABZR87_RS10755 0.45 +0.6
2,275,570 + -0.8
2,275,590 + -2.1
2,275,590 + +2.6
2,275,591 - -0.9
2,275,591 - +1.3
2,275,591 - +0.7
2,275,591 - +1.5
2,275,684 + -0.6
2,275,684 + -2.7
2,275,684 + -2.6
2,275,684 + +0.6
2,275,685 - -1.8
2,275,685 - -2.2
2,275,719 + +1.7
2,275,792 + +1.2
2,275,792 + +1.0
2,275,793 - +0.9
2,275,793 - +0.1
2,275,793 - -0.2
2,275,862 - +1.5
2,275,937 - +1.1
2,275,945 - +0.1
2,275,983 + +0.7
2,275,984 - +0.6
2,275,984 - +0.2
2,276,124 - ABZR87_RS10760 0.17 +0.8
2,276,124 - ABZR87_RS10760 0.17 -0.3
2,276,190 + ABZR87_RS10760 0.27 -2.6
2,276,190 + ABZR87_RS10760 0.27 -2.1
2,276,191 - ABZR87_RS10760 0.27 -0.4
2,276,290 - ABZR87_RS10760 0.42 -1.5
2,276,363 + ABZR87_RS10760 0.52 -2.0
2,276,363 + ABZR87_RS10760 0.52 -0.3
2,276,363 + ABZR87_RS10760 0.52 -1.2
2,276,363 + ABZR87_RS10760 0.52 -3.1
2,276,363 + ABZR87_RS10760 0.52 -0.2
2,276,363 + ABZR87_RS10760 0.52 -0.8
2,276,363 + ABZR87_RS10760 0.52 -0.1
2,276,363 + ABZR87_RS10760 0.52 +0.3
2,276,364 - ABZR87_RS10760 0.53 +1.8
2,276,364 - ABZR87_RS10760 0.53 +0.4
2,276,364 - ABZR87_RS10760 0.53 -0.7
2,276,365 + ABZR87_RS10760 0.53 -1.5
2,276,365 + ABZR87_RS10760 0.53 -1.7
2,276,365 + ABZR87_RS10760 0.53 -1.9
2,276,365 + ABZR87_RS10760 0.53 +0.4
2,276,365 + ABZR87_RS10760 0.53 +0.2
2,276,365 + ABZR87_RS10760 0.53 -2.0
2,276,365 + ABZR87_RS10760 0.53 +0.2
2,276,366 - ABZR87_RS10760 0.53 +2.0
2,276,366 - ABZR87_RS10760 0.53 +0.9
2,276,366 - ABZR87_RS10760 0.53 +1.8
2,276,366 - ABZR87_RS10760 0.53 -1.5
2,276,366 - ABZR87_RS10760 0.53 -2.8
2,276,422 - ABZR87_RS10760 0.61 -3.1
2,276,547 + ABZR87_RS10760 0.79 -1.1
2,276,612 + ABZR87_RS10760 0.89 +0.7
2,276,613 - ABZR87_RS10760 0.89 -0.1
2,276,613 - ABZR87_RS10760 0.89 -2.0

Or see this region's nucleotide sequence