Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09110

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS09105 and ABZR87_RS09110 are separated by 286 nucleotidesABZR87_RS09110 and ABZR87_RS09115 are separated by 1 nucleotides ABZR87_RS09105: ABZR87_RS09105 - IclR family transcriptional regulator, at 1,927,686 to 1,928,513 _RS09105 ABZR87_RS09110: ABZR87_RS09110 - tryptophan 2,3-dioxygenase, at 1,928,800 to 1,929,675 _RS09110 ABZR87_RS09115: ABZR87_RS09115 - kynureninase, at 1,929,677 to 1,930,930 _RS09115 Position (kb) 1928 1929 1930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1927.860 kb on - strand, within ABZR87_RS09105at 1927.860 kb on - strand, within ABZR87_RS09105at 1927.860 kb on - strand, within ABZR87_RS09105at 1927.908 kb on + strand, within ABZR87_RS09105at 1927.909 kb on - strand, within ABZR87_RS09105at 1927.909 kb on - strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.929 kb on + strand, within ABZR87_RS09105at 1927.930 kb on - strand, within ABZR87_RS09105at 1927.930 kb on - strand, within ABZR87_RS09105at 1927.930 kb on - strand, within ABZR87_RS09105at 1927.930 kb on - strand, within ABZR87_RS09105at 1927.968 kb on + strand, within ABZR87_RS09105at 1927.968 kb on + strand, within ABZR87_RS09105at 1927.969 kb on - strand, within ABZR87_RS09105at 1927.969 kb on - strand, within ABZR87_RS09105at 1928.079 kb on + strand, within ABZR87_RS09105at 1928.080 kb on - strand, within ABZR87_RS09105at 1928.080 kb on - strand, within ABZR87_RS09105at 1928.080 kb on - strand, within ABZR87_RS09105at 1928.181 kb on + strand, within ABZR87_RS09105at 1928.181 kb on + strand, within ABZR87_RS09105at 1928.181 kb on + strand, within ABZR87_RS09105at 1928.181 kb on + strand, within ABZR87_RS09105at 1928.220 kb on + strand, within ABZR87_RS09105at 1928.220 kb on + strand, within ABZR87_RS09105at 1928.220 kb on + strand, within ABZR87_RS09105at 1928.220 kb on + strand, within ABZR87_RS09105at 1928.299 kb on + strand, within ABZR87_RS09105at 1928.300 kb on - strand, within ABZR87_RS09105at 1928.391 kb on + strand, within ABZR87_RS09105at 1928.391 kb on + strand, within ABZR87_RS09105at 1928.391 kb on + strand, within ABZR87_RS09105at 1928.392 kb on - strand, within ABZR87_RS09105at 1928.392 kb on - strand, within ABZR87_RS09105at 1928.392 kb on - strand, within ABZR87_RS09105at 1928.415 kb on + strand, within ABZR87_RS09105at 1928.415 kb on + strand, within ABZR87_RS09105at 1928.415 kb on + strand, within ABZR87_RS09105at 1928.416 kb on - strand, within ABZR87_RS09105at 1928.588 kb on - strandat 1928.588 kb on - strandat 1928.588 kb on - strandat 1928.588 kb on - strandat 1928.588 kb on - strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.842 kb on + strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.843 kb on - strandat 1928.864 kb on + strandat 1928.990 kb on + strand, within ABZR87_RS09110at 1928.990 kb on + strand, within ABZR87_RS09110at 1928.990 kb on + strand, within ABZR87_RS09110at 1928.990 kb on + strand, within ABZR87_RS09110at 1929.020 kb on + strand, within ABZR87_RS09110at 1929.021 kb on - strand, within ABZR87_RS09110at 1929.056 kb on + strand, within ABZR87_RS09110at 1929.056 kb on + strand, within ABZR87_RS09110at 1929.056 kb on + strand, within ABZR87_RS09110at 1929.056 kb on + strand, within ABZR87_RS09110at 1929.056 kb on + strand, within ABZR87_RS09110at 1929.057 kb on + strand, within ABZR87_RS09110at 1929.057 kb on - strand, within ABZR87_RS09110at 1929.057 kb on - strand, within ABZR87_RS09110at 1929.057 kb on - strand, within ABZR87_RS09110at 1929.057 kb on - strand, within ABZR87_RS09110at 1929.125 kb on + strand, within ABZR87_RS09110at 1929.125 kb on + strand, within ABZR87_RS09110at 1929.125 kb on + strand, within ABZR87_RS09110at 1929.125 kb on + strand, within ABZR87_RS09110at 1929.126 kb on - strand, within ABZR87_RS09110at 1929.126 kb on - strand, within ABZR87_RS09110at 1929.126 kb on - strand, within ABZR87_RS09110at 1929.143 kb on + strand, within ABZR87_RS09110at 1929.183 kb on - strand, within ABZR87_RS09110at 1929.258 kb on - strand, within ABZR87_RS09110at 1929.263 kb on + strand, within ABZR87_RS09110at 1929.263 kb on + strand, within ABZR87_RS09110at 1929.264 kb on - strand, within ABZR87_RS09110at 1929.311 kb on + strand, within ABZR87_RS09110at 1929.312 kb on - strand, within ABZR87_RS09110at 1929.312 kb on - strand, within ABZR87_RS09110at 1929.563 kb on + strand, within ABZR87_RS09110at 1929.572 kb on + strand, within ABZR87_RS09110at 1929.572 kb on + strand, within ABZR87_RS09110at 1929.572 kb on + strand, within ABZR87_RS09110at 1929.573 kb on - strand, within ABZR87_RS09110at 1929.573 kb on - strand, within ABZR87_RS09110at 1929.573 kb on - strand, within ABZR87_RS09110at 1929.573 kb on - strand, within ABZR87_RS09110at 1929.691 kb on + strandat 1929.691 kb on + strandat 1929.691 kb on + strandat 1929.692 kb on - strandat 1929.692 kb on - strandat 1929.692 kb on - strandat 1929.692 kb on - strandat 1929.692 kb on - strandat 1929.692 kb on - strandat 1929.783 kb on + strandat 1929.871 kb on - strand, within ABZR87_RS09115at 1929.871 kb on - strand, within ABZR87_RS09115at 1929.888 kb on + strand, within ABZR87_RS09115at 1929.889 kb on - strand, within ABZR87_RS09115at 1929.889 kb on - strand, within ABZR87_RS09115at 1929.889 kb on - strand, within ABZR87_RS09115at 1930.122 kb on + strand, within ABZR87_RS09115at 1930.245 kb on + strand, within ABZR87_RS09115at 1930.245 kb on + strand, within ABZR87_RS09115at 1930.245 kb on + strand, within ABZR87_RS09115at 1930.245 kb on + strand, within ABZR87_RS09115at 1930.246 kb on - strand, within ABZR87_RS09115at 1930.246 kb on - strand, within ABZR87_RS09115at 1930.251 kb on + strand, within ABZR87_RS09115at 1930.251 kb on + strand, within ABZR87_RS09115at 1930.251 kb on + strand, within ABZR87_RS09115at 1930.252 kb on - strand, within ABZR87_RS09115at 1930.252 kb on - strand, within ABZR87_RS09115at 1930.269 kb on + strand, within ABZR87_RS09115at 1930.382 kb on + strand, within ABZR87_RS09115at 1930.383 kb on + strand, within ABZR87_RS09115at 1930.383 kb on + strand, within ABZR87_RS09115at 1930.383 kb on + strand, within ABZR87_RS09115at 1930.383 kb on + strand, within ABZR87_RS09115at 1930.383 kb on + strand, within ABZR87_RS09115at 1930.383 kb on + strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.384 kb on - strand, within ABZR87_RS09115at 1930.488 kb on + strand, within ABZR87_RS09115at 1930.488 kb on + strand, within ABZR87_RS09115at 1930.527 kb on + strand, within ABZR87_RS09115at 1930.527 kb on + strand, within ABZR87_RS09115at 1930.527 kb on + strand, within ABZR87_RS09115at 1930.527 kb on + strand, within ABZR87_RS09115at 1930.527 kb on + strand, within ABZR87_RS09115at 1930.527 kb on + strand, within ABZR87_RS09115at 1930.528 kb on - strand, within ABZR87_RS09115at 1930.528 kb on - strand, within ABZR87_RS09115at 1930.546 kb on + strand, within ABZR87_RS09115at 1930.547 kb on - strand, within ABZR87_RS09115at 1930.547 kb on - strand, within ABZR87_RS09115at 1930.620 kb on + strand, within ABZR87_RS09115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
1,927,860 - ABZR87_RS09105 0.21 -0.0
1,927,860 - ABZR87_RS09105 0.21 -2.5
1,927,860 - ABZR87_RS09105 0.21 +1.5
1,927,908 + ABZR87_RS09105 0.27 +2.0
1,927,909 - ABZR87_RS09105 0.27 +1.1
1,927,909 - ABZR87_RS09105 0.27 -0.1
1,927,929 + ABZR87_RS09105 0.29 -1.1
1,927,929 + ABZR87_RS09105 0.29 -0.7
1,927,929 + ABZR87_RS09105 0.29 -2.4
1,927,929 + ABZR87_RS09105 0.29 -0.2
1,927,929 + ABZR87_RS09105 0.29 -0.1
1,927,929 + ABZR87_RS09105 0.29 +0.9
1,927,929 + ABZR87_RS09105 0.29 +0.2
1,927,930 - ABZR87_RS09105 0.29 +1.4
1,927,930 - ABZR87_RS09105 0.29 -0.3
1,927,930 - ABZR87_RS09105 0.29 +0.5
1,927,930 - ABZR87_RS09105 0.29 -2.8
1,927,968 + ABZR87_RS09105 0.34 +0.7
1,927,968 + ABZR87_RS09105 0.34 +1.1
1,927,969 - ABZR87_RS09105 0.34 -0.1
1,927,969 - ABZR87_RS09105 0.34 +0.8
1,928,079 + ABZR87_RS09105 0.47 -0.0
1,928,080 - ABZR87_RS09105 0.48 +1.1
1,928,080 - ABZR87_RS09105 0.48 +0.1
1,928,080 - ABZR87_RS09105 0.48 +2.0
1,928,181 + ABZR87_RS09105 0.60 -1.8
1,928,181 + ABZR87_RS09105 0.60 -2.1
1,928,181 + ABZR87_RS09105 0.60 +0.4
1,928,181 + ABZR87_RS09105 0.60 +1.3
1,928,220 + ABZR87_RS09105 0.64 +0.8
1,928,220 + ABZR87_RS09105 0.64 +0.9
1,928,220 + ABZR87_RS09105 0.64 +0.0
1,928,220 + ABZR87_RS09105 0.64 -0.0
1,928,299 + ABZR87_RS09105 0.74 -2.2
1,928,300 - ABZR87_RS09105 0.74 +0.7
1,928,391 + ABZR87_RS09105 0.85 +0.4
1,928,391 + ABZR87_RS09105 0.85 +1.7
1,928,391 + ABZR87_RS09105 0.85 +0.1
1,928,392 - ABZR87_RS09105 0.85 -2.0
1,928,392 - ABZR87_RS09105 0.85 +0.8
1,928,392 - ABZR87_RS09105 0.85 +1.7
1,928,415 + ABZR87_RS09105 0.88 +0.7
1,928,415 + ABZR87_RS09105 0.88 -2.6
1,928,415 + ABZR87_RS09105 0.88 -1.9
1,928,416 - ABZR87_RS09105 0.88 -3.1
1,928,588 - +0.4
1,928,588 - -0.4
1,928,588 - +0.1
1,928,588 - -2.8
1,928,588 - +0.4
1,928,842 + +0.0
1,928,842 + +0.9
1,928,842 + +2.3
1,928,842 + -1.8
1,928,842 + -0.1
1,928,842 + +0.2
1,928,842 + +1.9
1,928,842 + -1.9
1,928,842 + +0.8
1,928,842 + +0.2
1,928,843 - +1.1
1,928,843 - -1.3
1,928,843 - -1.8
1,928,843 - -0.9
1,928,843 - -1.4
1,928,843 - +0.9
1,928,843 - +0.6
1,928,843 - -1.5
1,928,843 - -1.8
1,928,843 - +1.8
1,928,864 + -1.8
1,928,990 + ABZR87_RS09110 0.22 -1.7
1,928,990 + ABZR87_RS09110 0.22 +1.0
1,928,990 + ABZR87_RS09110 0.22 -1.6
1,928,990 + ABZR87_RS09110 0.22 -2.1
1,929,020 + ABZR87_RS09110 0.25 -0.4
1,929,021 - ABZR87_RS09110 0.25 -0.9
1,929,056 + ABZR87_RS09110 0.29 +2.4
1,929,056 + ABZR87_RS09110 0.29 -0.1
1,929,056 + ABZR87_RS09110 0.29 +1.5
1,929,056 + ABZR87_RS09110 0.29 +1.3
1,929,056 + ABZR87_RS09110 0.29 +2.2
1,929,057 + ABZR87_RS09110 0.29 -0.7
1,929,057 - ABZR87_RS09110 0.29 -1.7
1,929,057 - ABZR87_RS09110 0.29 -3.5
1,929,057 - ABZR87_RS09110 0.29 +0.4
1,929,057 - ABZR87_RS09110 0.29 -1.1
1,929,125 + ABZR87_RS09110 0.37 -1.4
1,929,125 + ABZR87_RS09110 0.37 -2.8
1,929,125 + ABZR87_RS09110 0.37 -0.0
1,929,125 + ABZR87_RS09110 0.37 +1.5
1,929,126 - ABZR87_RS09110 0.37 +2.2
1,929,126 - ABZR87_RS09110 0.37 +2.9
1,929,126 - ABZR87_RS09110 0.37 +0.2
1,929,143 + ABZR87_RS09110 0.39 +1.1
1,929,183 - ABZR87_RS09110 0.44 +2.4
1,929,258 - ABZR87_RS09110 0.52 -2.8
1,929,263 + ABZR87_RS09110 0.53 +0.4
1,929,263 + ABZR87_RS09110 0.53 -0.6
1,929,264 - ABZR87_RS09110 0.53 -1.9
1,929,311 + ABZR87_RS09110 0.58 +1.1
1,929,312 - ABZR87_RS09110 0.58 +1.8
1,929,312 - ABZR87_RS09110 0.58 -1.3
1,929,563 + ABZR87_RS09110 0.87 -2.2
1,929,572 + ABZR87_RS09110 0.88 -1.8
1,929,572 + ABZR87_RS09110 0.88 -1.7
1,929,572 + ABZR87_RS09110 0.88 -1.6
1,929,573 - ABZR87_RS09110 0.88 -1.0
1,929,573 - ABZR87_RS09110 0.88 +2.1
1,929,573 - ABZR87_RS09110 0.88 -1.7
1,929,573 - ABZR87_RS09110 0.88 -0.4
1,929,691 + -1.2
1,929,691 + -1.8
1,929,691 + +0.8
1,929,692 - -0.0
1,929,692 - +0.3
1,929,692 - +0.7
1,929,692 - -0.6
1,929,692 - -0.0
1,929,692 - +1.5
1,929,783 + +1.5
1,929,871 - ABZR87_RS09115 0.15 +0.1
1,929,871 - ABZR87_RS09115 0.15 -2.6
1,929,888 + ABZR87_RS09115 0.17 -3.6
1,929,889 - ABZR87_RS09115 0.17 -0.1
1,929,889 - ABZR87_RS09115 0.17 +0.5
1,929,889 - ABZR87_RS09115 0.17 +2.2
1,930,122 + ABZR87_RS09115 0.35 -0.5
1,930,245 + ABZR87_RS09115 0.45 -0.8
1,930,245 + ABZR87_RS09115 0.45 -2.7
1,930,245 + ABZR87_RS09115 0.45 +0.8
1,930,245 + ABZR87_RS09115 0.45 -0.8
1,930,246 - ABZR87_RS09115 0.45 +0.5
1,930,246 - ABZR87_RS09115 0.45 +1.2
1,930,251 + ABZR87_RS09115 0.46 +1.2
1,930,251 + ABZR87_RS09115 0.46 +1.0
1,930,251 + ABZR87_RS09115 0.46 -1.8
1,930,252 - ABZR87_RS09115 0.46 -1.6
1,930,252 - ABZR87_RS09115 0.46 -0.3
1,930,269 + ABZR87_RS09115 0.47 +0.8
1,930,382 + ABZR87_RS09115 0.56 +2.4
1,930,383 + ABZR87_RS09115 0.56 +0.5
1,930,383 + ABZR87_RS09115 0.56 -2.0
1,930,383 + ABZR87_RS09115 0.56 +0.2
1,930,383 + ABZR87_RS09115 0.56 -0.3
1,930,383 + ABZR87_RS09115 0.56 +2.1
1,930,383 + ABZR87_RS09115 0.56 -0.6
1,930,384 - ABZR87_RS09115 0.56 -2.1
1,930,384 - ABZR87_RS09115 0.56 +0.2
1,930,384 - ABZR87_RS09115 0.56 +1.0
1,930,384 - ABZR87_RS09115 0.56 -3.0
1,930,384 - ABZR87_RS09115 0.56 +1.0
1,930,384 - ABZR87_RS09115 0.56 +0.2
1,930,384 - ABZR87_RS09115 0.56 -2.6
1,930,384 - ABZR87_RS09115 0.56 -0.1
1,930,384 - ABZR87_RS09115 0.56 +0.8
1,930,488 + ABZR87_RS09115 0.65 -0.8
1,930,488 + ABZR87_RS09115 0.65 -1.6
1,930,527 + ABZR87_RS09115 0.68 -1.2
1,930,527 + ABZR87_RS09115 0.68 -2.7
1,930,527 + ABZR87_RS09115 0.68 +0.6
1,930,527 + ABZR87_RS09115 0.68 +0.3
1,930,527 + ABZR87_RS09115 0.68 -2.0
1,930,527 + ABZR87_RS09115 0.68 +0.0
1,930,528 - ABZR87_RS09115 0.68 +1.7
1,930,528 - ABZR87_RS09115 0.68 -0.2
1,930,546 + ABZR87_RS09115 0.69 +1.5
1,930,547 - ABZR87_RS09115 0.69 -0.4
1,930,547 - ABZR87_RS09115 0.69 +0.4
1,930,620 + ABZR87_RS09115 0.75 -1.4

Or see this region's nucleotide sequence