Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08525

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08520 and ABZR87_RS08525 are separated by 363 nucleotidesABZR87_RS08525 and ABZR87_RS08530 are separated by 131 nucleotidesABZR87_RS08530 and ABZR87_RS08535 are separated by 515 nucleotides ABZR87_RS08520: ABZR87_RS08520 - Flp pilus assembly protein CpaB, at 1,809,862 to 1,810,719 _RS08520 ABZR87_RS08525: ABZR87_RS08525 - prepilin peptidase, at 1,811,083 to 1,811,616 _RS08525 ABZR87_RS08530: ABZR87_RS08530 - Flp family type IVb pilin, at 1,811,748 to 1,811,924 _RS08530 ABZR87_RS08535: ABZR87_RS08535 - Flp family type IVb pilin, at 1,812,440 to 1,812,655 _RS08535 Position (kb) 1811 1812Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1810.310 kb on + strand, within ABZR87_RS08520at 1810.310 kb on + strand, within ABZR87_RS08520at 1810.310 kb on + strand, within ABZR87_RS08520at 1810.310 kb on + strand, within ABZR87_RS08520at 1810.311 kb on - strand, within ABZR87_RS08520at 1810.311 kb on - strand, within ABZR87_RS08520at 1810.311 kb on - strand, within ABZR87_RS08520at 1810.311 kb on - strand, within ABZR87_RS08520at 1810.776 kb on + strandat 1810.776 kb on + strandat 1811.107 kb on + strandat 1811.107 kb on + strandat 1811.399 kb on + strand, within ABZR87_RS08525at 1811.399 kb on + strand, within ABZR87_RS08525at 1811.399 kb on + strand, within ABZR87_RS08525at 1811.400 kb on - strand, within ABZR87_RS08525at 1811.400 kb on - strand, within ABZR87_RS08525at 1811.825 kb on - strand, within ABZR87_RS08530at 1811.825 kb on - strand, within ABZR87_RS08530at 1811.867 kb on - strand, within ABZR87_RS08530at 1811.867 kb on - strand, within ABZR87_RS08530at 1812.346 kb on - strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.438 kb on + strandat 1812.439 kb on - strandat 1812.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,810,310 + ABZR87_RS08520 0.52 -1.1
1,810,310 + ABZR87_RS08520 0.52 -1.9
1,810,310 + ABZR87_RS08520 0.52 -2.0
1,810,310 + ABZR87_RS08520 0.52 +1.4
1,810,311 - ABZR87_RS08520 0.52 -2.0
1,810,311 - ABZR87_RS08520 0.52 -0.1
1,810,311 - ABZR87_RS08520 0.52 +1.0
1,810,311 - ABZR87_RS08520 0.52 +1.5
1,810,776 + -0.2
1,810,776 + -0.5
1,811,107 + -1.8
1,811,107 + -0.3
1,811,399 + ABZR87_RS08525 0.59 +0.6
1,811,399 + ABZR87_RS08525 0.59 +1.3
1,811,399 + ABZR87_RS08525 0.59 -3.5
1,811,400 - ABZR87_RS08525 0.59 -1.2
1,811,400 - ABZR87_RS08525 0.59 +0.2
1,811,825 - ABZR87_RS08530 0.44 -3.5
1,811,825 - ABZR87_RS08530 0.44 -2.4
1,811,867 - ABZR87_RS08530 0.67 -0.6
1,811,867 - ABZR87_RS08530 0.67 -2.4
1,812,346 - -0.5
1,812,438 + +4.3
1,812,438 + -1.6
1,812,438 + -3.1
1,812,438 + +0.4
1,812,438 + +0.2
1,812,438 + +1.8
1,812,438 + -1.1
1,812,439 - -0.3
1,812,439 - -0.5

Or see this region's nucleotide sequence