Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08260

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08250 and ABZR87_RS08255 are separated by 14 nucleotidesABZR87_RS08255 and ABZR87_RS08260 overlap by 4 nucleotidesABZR87_RS08260 and ABZR87_RS08265 overlap by 4 nucleotidesABZR87_RS08265 and ABZR87_RS08270 overlap by 4 nucleotides ABZR87_RS08250: ABZR87_RS08250 - PLP-dependent aminotransferase family protein, at 1,752,029 to 1,753,492 _RS08250 ABZR87_RS08255: ABZR87_RS08255 - ABC-type transport auxiliary lipoprotein family protein, at 1,753,507 to 1,754,175 _RS08255 ABZR87_RS08260: ABZR87_RS08260 - intermembrane transport protein PqiB, at 1,754,172 to 1,755,815 _RS08260 ABZR87_RS08265: ABZR87_RS08265 - paraquat-inducible protein A, at 1,755,812 to 1,756,549 _RS08265 ABZR87_RS08270: ABZR87_RS08270 - paraquat-inducible protein A, at 1,756,546 to 1,757,325 _RS08270 Position (kb) 1754 1755 1756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1753.778 kb on + strand, within ABZR87_RS08255at 1753.778 kb on + strand, within ABZR87_RS08255at 1753.779 kb on - strand, within ABZR87_RS08255at 1753.779 kb on - strand, within ABZR87_RS08255at 1753.805 kb on + strand, within ABZR87_RS08255at 1753.956 kb on + strand, within ABZR87_RS08255at 1753.956 kb on + strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.228 kb on - strandat 1754.563 kb on + strand, within ABZR87_RS08260at 1754.563 kb on + strand, within ABZR87_RS08260at 1754.563 kb on + strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.564 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.834 kb on - strand, within ABZR87_RS08260at 1754.926 kb on + strand, within ABZR87_RS08260at 1754.926 kb on + strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1754.927 kb on - strand, within ABZR87_RS08260at 1755.229 kb on + strand, within ABZR87_RS08260at 1755.229 kb on + strand, within ABZR87_RS08260at 1755.230 kb on - strand, within ABZR87_RS08260at 1755.266 kb on - strand, within ABZR87_RS08260at 1755.413 kb on + strand, within ABZR87_RS08260at 1755.414 kb on - strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.605 kb on - strand, within ABZR87_RS08260at 1755.815 kb on + strandat 1756.038 kb on + strand, within ABZR87_RS08265at 1756.039 kb on - strand, within ABZR87_RS08265at 1756.039 kb on - strand, within ABZR87_RS08265at 1756.189 kb on - strand, within ABZR87_RS08265at 1756.241 kb on - strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.582 kb on + strandat 1756.582 kb on + strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,753,778 + ABZR87_RS08255 0.41 -1.1
1,753,778 + ABZR87_RS08255 0.41 +2.0
1,753,779 - ABZR87_RS08255 0.41 -2.9
1,753,779 - ABZR87_RS08255 0.41 +2.3
1,753,805 + ABZR87_RS08255 0.45 +0.8
1,753,956 + ABZR87_RS08255 0.67 -0.3
1,753,956 + ABZR87_RS08255 0.67 +1.3
1,753,957 - ABZR87_RS08255 0.67 +0.5
1,753,957 - ABZR87_RS08255 0.67 -0.7
1,753,957 - ABZR87_RS08255 0.67 -0.4
1,754,067 + ABZR87_RS08255 0.84 -1.8
1,754,067 + ABZR87_RS08255 0.84 -1.7
1,754,067 + ABZR87_RS08255 0.84 -1.1
1,754,067 + ABZR87_RS08255 0.84 +1.3
1,754,068 - ABZR87_RS08255 0.84 +1.0
1,754,068 - ABZR87_RS08255 0.84 +0.4
1,754,068 - ABZR87_RS08255 0.84 -3.3
1,754,068 - ABZR87_RS08255 0.84 +0.9
1,754,068 - ABZR87_RS08255 0.84 -0.3
1,754,068 - ABZR87_RS08255 0.84 -0.3
1,754,068 - ABZR87_RS08255 0.84 -0.1
1,754,068 - ABZR87_RS08255 0.84 -1.0
1,754,068 - ABZR87_RS08255 0.84 -2.0
1,754,228 - +0.6
1,754,563 + ABZR87_RS08260 0.24 +0.4
1,754,563 + ABZR87_RS08260 0.24 +1.1
1,754,563 + ABZR87_RS08260 0.24 -0.8
1,754,564 - ABZR87_RS08260 0.24 -1.7
1,754,564 - ABZR87_RS08260 0.24 -1.4
1,754,564 - ABZR87_RS08260 0.24 -1.7
1,754,564 - ABZR87_RS08260 0.24 +0.1
1,754,834 - ABZR87_RS08260 0.40 +0.1
1,754,834 - ABZR87_RS08260 0.40 +0.6
1,754,834 - ABZR87_RS08260 0.40 -2.5
1,754,926 + ABZR87_RS08260 0.46 +0.4
1,754,926 + ABZR87_RS08260 0.46 +0.8
1,754,927 - ABZR87_RS08260 0.46 +1.6
1,754,927 - ABZR87_RS08260 0.46 -0.2
1,754,927 - ABZR87_RS08260 0.46 -0.3
1,754,927 - ABZR87_RS08260 0.46 +0.5
1,755,229 + ABZR87_RS08260 0.64 -3.2
1,755,229 + ABZR87_RS08260 0.64 -2.6
1,755,230 - ABZR87_RS08260 0.64 -2.5
1,755,266 - ABZR87_RS08260 0.67 +1.5
1,755,413 + ABZR87_RS08260 0.75 -2.0
1,755,414 - ABZR87_RS08260 0.76 +0.1
1,755,604 + ABZR87_RS08260 0.87 +0.7
1,755,604 + ABZR87_RS08260 0.87 -0.4
1,755,604 + ABZR87_RS08260 0.87 +2.7
1,755,604 + ABZR87_RS08260 0.87 -1.2
1,755,604 + ABZR87_RS08260 0.87 +0.7
1,755,605 - ABZR87_RS08260 0.87 -2.5
1,755,815 + -3.4
1,756,038 + ABZR87_RS08265 0.31 -0.1
1,756,039 - ABZR87_RS08265 0.31 +0.1
1,756,039 - ABZR87_RS08265 0.31 +0.2
1,756,189 - ABZR87_RS08265 0.51 -1.6
1,756,241 - ABZR87_RS08265 0.58 +1.0
1,756,272 + ABZR87_RS08265 0.62 +0.5
1,756,272 + ABZR87_RS08265 0.62 -2.8
1,756,272 + ABZR87_RS08265 0.62 +0.4
1,756,272 + ABZR87_RS08265 0.62 -2.1
1,756,272 + ABZR87_RS08265 0.62 -0.1
1,756,272 + ABZR87_RS08265 0.62 -1.2
1,756,273 - ABZR87_RS08265 0.62 -3.0
1,756,273 - ABZR87_RS08265 0.62 +0.7
1,756,273 - ABZR87_RS08265 0.62 -2.1
1,756,273 - ABZR87_RS08265 0.62 -0.2
1,756,273 - ABZR87_RS08265 0.62 -0.6
1,756,273 - ABZR87_RS08265 0.62 -1.5
1,756,273 - ABZR87_RS08265 0.62 -0.2
1,756,273 - ABZR87_RS08265 0.62 -0.6
1,756,582 + -1.2
1,756,582 + +1.5
1,756,583 - -0.1
1,756,583 - -0.5
1,756,583 - -1.6
1,756,583 - -1.3

Or see this region's nucleotide sequence