Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08230 and ABZR87_RS08235 overlap by 2 nucleotides ABZR87_RS08235 and ABZR87_RS08240 overlap by 4 nucleotides ABZR87_RS08240 and ABZR87_RS08245 are separated by 16 nucleotides ABZR87_RS08245 and ABZR87_RS08250 are separated by 218 nucleotides
ABZR87_RS08230: ABZR87_RS08230 - hypothetical protein, at 1,750,211 to 1,750,798
_RS08230
ABZR87_RS08235: ABZR87_RS08235 - hypothetical protein, at 1,750,797 to 1,751,255
_RS08235
ABZR87_RS08240: ABZR87_RS08240 - hypothetical protein, at 1,751,252 to 1,751,452
_RS08240
ABZR87_RS08245: ABZR87_RS08245 - hypothetical protein, at 1,751,469 to 1,751,810
_RS08245
ABZR87_RS08250: ABZR87_RS08250 - PLP-dependent aminotransferase family protein, at 1,752,029 to 1,753,492
_RS08250
Position (kb)
1751
1752 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1750.472 kb on + strand, within ABZR87_RS08230 at 1750.472 kb on + strand, within ABZR87_RS08230 at 1750.505 kb on + strand, within ABZR87_RS08230 at 1750.505 kb on + strand, within ABZR87_RS08230 at 1750.506 kb on - strand, within ABZR87_RS08230 at 1750.779 kb on + strand at 1750.859 kb on + strand, within ABZR87_RS08235 at 1751.654 kb on + strand, within ABZR87_RS08245 at 1751.654 kb on + strand, within ABZR87_RS08245 at 1751.655 kb on - strand, within ABZR87_RS08245 at 1751.655 kb on - strand, within ABZR87_RS08245 at 1751.655 kb on - strand, within ABZR87_RS08245 at 1751.655 kb on - strand, within ABZR87_RS08245 at 1751.656 kb on + strand, within ABZR87_RS08245 at 1751.702 kb on + strand, within ABZR87_RS08245 at 1751.702 kb on + strand, within ABZR87_RS08245 at 1751.702 kb on + strand, within ABZR87_RS08245 at 1751.702 kb on + strand, within ABZR87_RS08245 at 1751.703 kb on - strand, within ABZR87_RS08245 at 1751.838 kb on + strand at 1751.838 kb on + strand at 1751.838 kb on + strand at 1751.838 kb on + strand at 1751.839 kb on - strand at 1751.839 kb on - strand at 1751.922 kb on + strand at 1751.923 kb on - strand at 1751.923 kb on - strand at 1751.923 kb on - strand at 1751.942 kb on - strand at 1752.072 kb on - strand at 1752.072 kb on - strand at 1752.092 kb on + strand at 1752.092 kb on + strand at 1752.092 kb on + strand at 1752.092 kb on + strand at 1752.093 kb on - strand at 1752.198 kb on + strand, within ABZR87_RS08250 at 1752.198 kb on + strand, within ABZR87_RS08250 at 1752.198 kb on + strand, within ABZR87_RS08250 at 1752.199 kb on - strand, within ABZR87_RS08250 at 1752.199 kb on - strand, within ABZR87_RS08250 at 1752.199 kb on - strand, within ABZR87_RS08250 at 1752.329 kb on + strand, within ABZR87_RS08250 at 1752.329 kb on + strand, within ABZR87_RS08250 at 1752.330 kb on - strand, within ABZR87_RS08250 at 1752.330 kb on - strand, within ABZR87_RS08250 at 1752.330 kb on - strand, within ABZR87_RS08250 at 1752.400 kb on - strand, within ABZR87_RS08250 at 1752.400 kb on - strand, within ABZR87_RS08250 at 1752.428 kb on + strand, within ABZR87_RS08250 at 1752.477 kb on - strand, within ABZR87_RS08250 at 1752.605 kb on - strand, within ABZR87_RS08250 at 1752.605 kb on - strand, within ABZR87_RS08250 at 1752.652 kb on + strand, within ABZR87_RS08250 at 1752.677 kb on + strand, within ABZR87_RS08250 at 1752.678 kb on - strand, within ABZR87_RS08250 at 1752.678 kb on - strand, within ABZR87_RS08250 at 1752.680 kb on + strand, within ABZR87_RS08250 at 1752.680 kb on + strand, within ABZR87_RS08250 at 1752.680 kb on + strand, within ABZR87_RS08250 at 1752.681 kb on - strand, within ABZR87_RS08250 at 1752.681 kb on - strand, within ABZR87_RS08250 at 1752.681 kb on - strand, within ABZR87_RS08250
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,750,472 + ABZR87_RS08230 0.44 -0.3 1,750,472 + ABZR87_RS08230 0.44 -1.3 1,750,505 + ABZR87_RS08230 0.50 -0.4 1,750,505 + ABZR87_RS08230 0.50 -2.0 1,750,506 - ABZR87_RS08230 0.50 -0.3 1,750,779 + -0.3 1,750,859 + ABZR87_RS08235 0.14 +0.7 1,751,654 + ABZR87_RS08245 0.54 -3.3 1,751,654 + ABZR87_RS08245 0.54 -0.9 1,751,655 - ABZR87_RS08245 0.54 +3.0 1,751,655 - ABZR87_RS08245 0.54 -1.5 1,751,655 - ABZR87_RS08245 0.54 +0.1 1,751,655 - ABZR87_RS08245 0.54 -2.0 1,751,656 + ABZR87_RS08245 0.55 -1.7 1,751,702 + ABZR87_RS08245 0.68 +1.1 1,751,702 + ABZR87_RS08245 0.68 +1.6 1,751,702 + ABZR87_RS08245 0.68 -0.5 1,751,702 + ABZR87_RS08245 0.68 +0.6 1,751,703 - ABZR87_RS08245 0.68 -2.1 1,751,838 + -0.8 1,751,838 + -2.8 1,751,838 + -0.4 1,751,838 + -1.7 1,751,839 - +2.2 1,751,839 - +1.1 1,751,922 + -2.8 1,751,923 - +1.2 1,751,923 - +1.0 1,751,923 - -3.3 1,751,942 - -2.6 1,752,072 - +0.9 1,752,072 - +0.9 1,752,092 + +1.2 1,752,092 + +1.3 1,752,092 + -3.4 1,752,092 + +1.0 1,752,093 - +1.5 1,752,198 + ABZR87_RS08250 0.12 +0.9 1,752,198 + ABZR87_RS08250 0.12 -1.7 1,752,198 + ABZR87_RS08250 0.12 -0.4 1,752,199 - ABZR87_RS08250 0.12 +0.2 1,752,199 - ABZR87_RS08250 0.12 -2.6 1,752,199 - ABZR87_RS08250 0.12 -1.1 1,752,329 + ABZR87_RS08250 0.20 +1.6 1,752,329 + ABZR87_RS08250 0.20 -2.6 1,752,330 - ABZR87_RS08250 0.21 +0.7 1,752,330 - ABZR87_RS08250 0.21 -3.0 1,752,330 - ABZR87_RS08250 0.21 -1.7 1,752,400 - ABZR87_RS08250 0.25 -1.3 1,752,400 - ABZR87_RS08250 0.25 +0.9 1,752,428 + ABZR87_RS08250 0.27 -0.9 1,752,477 - ABZR87_RS08250 0.31 -0.7 1,752,605 - ABZR87_RS08250 0.39 -2.5 1,752,605 - ABZR87_RS08250 0.39 +1.2 1,752,652 + ABZR87_RS08250 0.43 +3.4 1,752,677 + ABZR87_RS08250 0.44 -1.4 1,752,678 - ABZR87_RS08250 0.44 -1.7 1,752,678 - ABZR87_RS08250 0.44 -2.0 1,752,680 + ABZR87_RS08250 0.44 -0.4 1,752,680 + ABZR87_RS08250 0.44 -2.7 1,752,680 + ABZR87_RS08250 0.44 -1.8 1,752,681 - ABZR87_RS08250 0.45 +0.1 1,752,681 - ABZR87_RS08250 0.45 +2.2 1,752,681 - ABZR87_RS08250 0.45 -0.1
Or see this region's nucleotide sequence