Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06185 and ABZR87_RS06190 are separated by 279 nucleotides ABZR87_RS06190 and ABZR87_RS06195 are separated by 1 nucleotides
ABZR87_RS06185: ABZR87_RS06185 - TonB-dependent siderophore receptor, at 1,317,650 to 1,319,929
_RS06185
ABZR87_RS06190: ABZR87_RS06190 - enoyl-CoA hydratase/isomerase family protein, at 1,320,209 to 1,320,982
_RS06190
ABZR87_RS06195: ABZR87_RS06195 - acyclic terpene utilization AtuA family protein, at 1,320,984 to 1,322,756
_RS06195
Position (kb)
1320
1321 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1319.323 kb on - strand, within ABZR87_RS06185 at 1319.350 kb on - strand, within ABZR87_RS06185 at 1319.877 kb on + strand at 1319.877 kb on + strand at 1320.056 kb on + strand at 1320.057 kb on - strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.058 kb on + strand at 1320.059 kb on - strand at 1320.059 kb on - strand at 1320.059 kb on - strand at 1320.771 kb on + strand, within ABZR87_RS06190 at 1320.771 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.833 kb on + strand, within ABZR87_RS06190 at 1320.834 kb on - strand, within ABZR87_RS06190 at 1321.095 kb on + strand at 1321.096 kb on - strand at 1321.158 kb on + strand at 1321.159 kb on - strand at 1321.431 kb on + strand, within ABZR87_RS06195 at 1321.561 kb on - strand, within ABZR87_RS06195 at 1321.561 kb on - strand, within ABZR87_RS06195 at 1321.777 kb on - strand, within ABZR87_RS06195 at 1321.800 kb on + strand, within ABZR87_RS06195 at 1321.801 kb on - strand, within ABZR87_RS06195 at 1321.801 kb on - strand, within ABZR87_RS06195 at 1321.801 kb on - strand, within ABZR87_RS06195 at 1321.908 kb on + strand, within ABZR87_RS06195 at 1321.908 kb on + strand, within ABZR87_RS06195 at 1321.909 kb on - strand, within ABZR87_RS06195 at 1321.909 kb on - strand, within ABZR87_RS06195 at 1321.926 kb on + strand, within ABZR87_RS06195 at 1321.926 kb on + strand, within ABZR87_RS06195 at 1321.927 kb on - strand, within ABZR87_RS06195 at 1321.927 kb on - strand, within ABZR87_RS06195
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,319,323 - ABZR87_RS06185 0.73 -0.2 1,319,350 - ABZR87_RS06185 0.75 +1.6 1,319,877 + +1.1 1,319,877 + +1.9 1,320,056 + +0.2 1,320,057 - +0.4 1,320,058 + +1.2 1,320,058 + +0.0 1,320,058 + -3.4 1,320,058 + +1.5 1,320,058 + +1.0 1,320,058 + +0.6 1,320,058 + -1.2 1,320,058 + -0.4 1,320,059 - +2.5 1,320,059 - -2.3 1,320,059 - +1.6 1,320,771 + ABZR87_RS06190 0.73 +4.1 1,320,771 + ABZR87_RS06190 0.73 -0.8 1,320,833 + ABZR87_RS06190 0.81 -2.2 1,320,833 + ABZR87_RS06190 0.81 -0.8 1,320,833 + ABZR87_RS06190 0.81 +1.2 1,320,833 + ABZR87_RS06190 0.81 -2.4 1,320,834 - ABZR87_RS06190 0.81 -0.7 1,321,095 + +0.9 1,321,096 - -2.6 1,321,158 + -0.7 1,321,159 - +1.9 1,321,431 + ABZR87_RS06195 0.25 +0.1 1,321,561 - ABZR87_RS06195 0.33 -1.3 1,321,561 - ABZR87_RS06195 0.33 -0.1 1,321,777 - ABZR87_RS06195 0.45 -3.7 1,321,800 + ABZR87_RS06195 0.46 -0.9 1,321,801 - ABZR87_RS06195 0.46 +2.0 1,321,801 - ABZR87_RS06195 0.46 -2.6 1,321,801 - ABZR87_RS06195 0.46 +1.3 1,321,908 + ABZR87_RS06195 0.52 +1.3 1,321,908 + ABZR87_RS06195 0.52 -0.9 1,321,909 - ABZR87_RS06195 0.52 +1.0 1,321,909 - ABZR87_RS06195 0.52 +0.3 1,321,926 + ABZR87_RS06195 0.53 -0.2 1,321,926 + ABZR87_RS06195 0.53 +0.3 1,321,927 - ABZR87_RS06195 0.53 +2.0 1,321,927 - ABZR87_RS06195 0.53 +0.4
Or see this region's nucleotide sequence