Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06190

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06185 and ABZR87_RS06190 are separated by 279 nucleotidesABZR87_RS06190 and ABZR87_RS06195 are separated by 1 nucleotides ABZR87_RS06185: ABZR87_RS06185 - TonB-dependent siderophore receptor, at 1,317,650 to 1,319,929 _RS06185 ABZR87_RS06190: ABZR87_RS06190 - enoyl-CoA hydratase/isomerase family protein, at 1,320,209 to 1,320,982 _RS06190 ABZR87_RS06195: ABZR87_RS06195 - acyclic terpene utilization AtuA family protein, at 1,320,984 to 1,322,756 _RS06195 Position (kb) 1320 1321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1319.323 kb on - strand, within ABZR87_RS06185at 1319.350 kb on - strand, within ABZR87_RS06185at 1319.877 kb on + strandat 1319.877 kb on + strandat 1320.056 kb on + strandat 1320.057 kb on - strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.058 kb on + strandat 1320.059 kb on - strandat 1320.059 kb on - strandat 1320.059 kb on - strandat 1320.771 kb on + strand, within ABZR87_RS06190at 1320.771 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.833 kb on + strand, within ABZR87_RS06190at 1320.834 kb on - strand, within ABZR87_RS06190at 1321.095 kb on + strandat 1321.096 kb on - strandat 1321.158 kb on + strandat 1321.159 kb on - strandat 1321.431 kb on + strand, within ABZR87_RS06195at 1321.561 kb on - strand, within ABZR87_RS06195at 1321.561 kb on - strand, within ABZR87_RS06195at 1321.777 kb on - strand, within ABZR87_RS06195at 1321.800 kb on + strand, within ABZR87_RS06195at 1321.801 kb on - strand, within ABZR87_RS06195at 1321.801 kb on - strand, within ABZR87_RS06195at 1321.801 kb on - strand, within ABZR87_RS06195at 1321.908 kb on + strand, within ABZR87_RS06195at 1321.908 kb on + strand, within ABZR87_RS06195at 1321.909 kb on - strand, within ABZR87_RS06195at 1321.909 kb on - strand, within ABZR87_RS06195at 1321.926 kb on + strand, within ABZR87_RS06195at 1321.926 kb on + strand, within ABZR87_RS06195at 1321.927 kb on - strand, within ABZR87_RS06195at 1321.927 kb on - strand, within ABZR87_RS06195

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,319,323 - ABZR87_RS06185 0.73 -0.2
1,319,350 - ABZR87_RS06185 0.75 +1.6
1,319,877 + +1.1
1,319,877 + +1.9
1,320,056 + +0.2
1,320,057 - +0.4
1,320,058 + +1.2
1,320,058 + +0.0
1,320,058 + -3.4
1,320,058 + +1.5
1,320,058 + +1.0
1,320,058 + +0.6
1,320,058 + -1.2
1,320,058 + -0.4
1,320,059 - +2.5
1,320,059 - -2.3
1,320,059 - +1.6
1,320,771 + ABZR87_RS06190 0.73 +4.1
1,320,771 + ABZR87_RS06190 0.73 -0.8
1,320,833 + ABZR87_RS06190 0.81 -2.2
1,320,833 + ABZR87_RS06190 0.81 -0.8
1,320,833 + ABZR87_RS06190 0.81 +1.2
1,320,833 + ABZR87_RS06190 0.81 -2.4
1,320,834 - ABZR87_RS06190 0.81 -0.7
1,321,095 + +0.9
1,321,096 - -2.6
1,321,158 + -0.7
1,321,159 - +1.9
1,321,431 + ABZR87_RS06195 0.25 +0.1
1,321,561 - ABZR87_RS06195 0.33 -1.3
1,321,561 - ABZR87_RS06195 0.33 -0.1
1,321,777 - ABZR87_RS06195 0.45 -3.7
1,321,800 + ABZR87_RS06195 0.46 -0.9
1,321,801 - ABZR87_RS06195 0.46 +2.0
1,321,801 - ABZR87_RS06195 0.46 -2.6
1,321,801 - ABZR87_RS06195 0.46 +1.3
1,321,908 + ABZR87_RS06195 0.52 +1.3
1,321,908 + ABZR87_RS06195 0.52 -0.9
1,321,909 - ABZR87_RS06195 0.52 +1.0
1,321,909 - ABZR87_RS06195 0.52 +0.3
1,321,926 + ABZR87_RS06195 0.53 -0.2
1,321,926 + ABZR87_RS06195 0.53 +0.3
1,321,927 - ABZR87_RS06195 0.53 +2.0
1,321,927 - ABZR87_RS06195 0.53 +0.4

Or see this region's nucleotide sequence