Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04650 and ABZR87_RS04655 are separated by 114 nucleotides ABZR87_RS04655 and ABZR87_RS04660 are separated by 138 nucleotides
ABZR87_RS04650: ABZR87_RS04650 - LysR family transcriptional regulator, at 972,242 to 973,126
_RS04650
ABZR87_RS04655: ABZR87_RS04655 - N-acetyl-gamma-glutamyl-phosphate reductase, at 973,241 to 974,173
_RS04655
ABZR87_RS04660: ABZR87_RS04660 - bifunctional allantoicase/(S)-ureidoglycine aminohydrolase, at 974,312 to 975,148
_RS04660
Position (kb) 973
974
975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 972.243 kb on + strand at 972.410 kb on - strand, within ABZR87_RS04650 at 972.417 kb on + strand, within ABZR87_RS04650 at 972.418 kb on - strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.454 kb on - strand, within ABZR87_RS04650 at 972.484 kb on - strand, within ABZR87_RS04650 at 972.578 kb on - strand, within ABZR87_RS04650 at 972.840 kb on - strand, within ABZR87_RS04650 at 972.840 kb on - strand, within ABZR87_RS04650 at 973.173 kb on - strand at 973.188 kb on + strand at 973.189 kb on - strand at 973.262 kb on - strand at 973.526 kb on + strand, within ABZR87_RS04655 at 973.526 kb on + strand, within ABZR87_RS04655 at 973.602 kb on - strand, within ABZR87_RS04655 at 973.694 kb on + strand, within ABZR87_RS04655 at 973.695 kb on - strand, within ABZR87_RS04655 at 973.695 kb on - strand, within ABZR87_RS04655 at 973.727 kb on + strand, within ABZR87_RS04655 at 973.727 kb on + strand, within ABZR87_RS04655 at 973.728 kb on - strand, within ABZR87_RS04655 at 973.769 kb on + strand, within ABZR87_RS04655 at 973.825 kb on + strand, within ABZR87_RS04655 at 973.862 kb on + strand, within ABZR87_RS04655 at 973.958 kb on + strand, within ABZR87_RS04655 at 973.958 kb on + strand, within ABZR87_RS04655 at 973.958 kb on + strand, within ABZR87_RS04655 at 973.958 kb on + strand, within ABZR87_RS04655 at 974.206 kb on - strand at 974.206 kb on - strand at 974.232 kb on + strand at 974.252 kb on + strand at 974.252 kb on + strand at 974.253 kb on - strand at 974.317 kb on + strand at 974.317 kb on + strand at 974.317 kb on + strand at 974.318 kb on - strand at 974.318 kb on - strand at 974.318 kb on - strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.327 kb on + strand at 974.328 kb on - strand at 974.328 kb on - strand at 974.328 kb on - strand at 974.328 kb on - strand at 974.331 kb on - strand at 974.331 kb on - strand at 974.399 kb on + strand, within ABZR87_RS04660 at 974.400 kb on - strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.522 kb on + strand, within ABZR87_RS04660 at 974.523 kb on - strand, within ABZR87_RS04660 at 974.523 kb on - strand, within ABZR87_RS04660 at 974.660 kb on + strand, within ABZR87_RS04660 at 974.744 kb on + strand, within ABZR87_RS04660 at 974.744 kb on + strand, within ABZR87_RS04660 at 974.745 kb on - strand, within ABZR87_RS04660 at 974.745 kb on - strand, within ABZR87_RS04660 at 974.745 kb on - strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.960 kb on + strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.961 kb on - strand, within ABZR87_RS04660 at 974.985 kb on - strand, within ABZR87_RS04660 at 975.062 kb on + strand, within ABZR87_RS04660 at 975.062 kb on + strand, within ABZR87_RS04660 at 975.062 kb on + strand, within ABZR87_RS04660 at 975.063 kb on - strand, within ABZR87_RS04660 at 975.063 kb on - strand, within ABZR87_RS04660 at 975.090 kb on - strand at 975.098 kb on + strand at 975.098 kb on + strand at 975.098 kb on + strand at 975.099 kb on - strand at 975.099 kb on - strand at 975.099 kb on - strand at 975.099 kb on - strand at 975.166 kb on + strand at 975.167 kb on - strand at 975.167 kb on - strand at 975.167 kb on - strand at 975.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 972,243 + +0.8 972,410 - ABZR87_RS04650 0.19 +3.6 972,417 + ABZR87_RS04650 0.20 -1.6 972,418 - ABZR87_RS04650 0.20 +0.3 972,453 + ABZR87_RS04650 0.24 +1.0 972,453 + ABZR87_RS04650 0.24 +1.0 972,453 + ABZR87_RS04650 0.24 +0.6 972,453 + ABZR87_RS04650 0.24 -1.0 972,453 + ABZR87_RS04650 0.24 +0.6 972,454 - ABZR87_RS04650 0.24 +1.9 972,484 - ABZR87_RS04650 0.27 -2.7 972,578 - ABZR87_RS04650 0.38 -1.1 972,840 - ABZR87_RS04650 0.68 +1.5 972,840 - ABZR87_RS04650 0.68 +1.2 973,173 - +0.7 973,188 + -0.8 973,189 - -0.8 973,262 - +0.8 973,526 + ABZR87_RS04655 0.31 -1.9 973,526 + ABZR87_RS04655 0.31 +1.9 973,602 - ABZR87_RS04655 0.39 +2.0 973,694 + ABZR87_RS04655 0.49 -1.8 973,695 - ABZR87_RS04655 0.49 -2.2 973,695 - ABZR87_RS04655 0.49 +1.6 973,727 + ABZR87_RS04655 0.52 -0.4 973,727 + ABZR87_RS04655 0.52 +1.5 973,728 - ABZR87_RS04655 0.52 -2.6 973,769 + ABZR87_RS04655 0.57 +0.7 973,825 + ABZR87_RS04655 0.63 +0.7 973,862 + ABZR87_RS04655 0.67 -1.9 973,958 + ABZR87_RS04655 0.77 -3.1 973,958 + ABZR87_RS04655 0.77 -1.0 973,958 + ABZR87_RS04655 0.77 -0.3 973,958 + ABZR87_RS04655 0.77 -1.5 974,206 - +1.3 974,206 - +1.4 974,232 + +1.4 974,252 + -0.4 974,252 + +1.2 974,253 - +0.7 974,317 + +1.8 974,317 + -3.1 974,317 + +1.0 974,318 - +1.0 974,318 - -1.6 974,318 - -0.7 974,327 + -1.7 974,327 + -1.0 974,327 + -0.8 974,327 + +1.8 974,327 + -0.4 974,328 - -2.8 974,328 - -0.7 974,328 - +0.6 974,328 - +0.8 974,331 - -2.2 974,331 - -1.2 974,399 + ABZR87_RS04660 0.10 -0.7 974,400 - ABZR87_RS04660 0.11 -3.4 974,522 + ABZR87_RS04660 0.25 -2.2 974,522 + ABZR87_RS04660 0.25 -1.2 974,522 + ABZR87_RS04660 0.25 +0.0 974,522 + ABZR87_RS04660 0.25 -2.5 974,523 - ABZR87_RS04660 0.25 +2.1 974,523 - ABZR87_RS04660 0.25 +1.1 974,660 + ABZR87_RS04660 0.42 +1.2 974,744 + ABZR87_RS04660 0.52 -0.4 974,744 + ABZR87_RS04660 0.52 +1.1 974,745 - ABZR87_RS04660 0.52 -2.8 974,745 - ABZR87_RS04660 0.52 -0.1 974,745 - ABZR87_RS04660 0.52 +0.8 974,960 + ABZR87_RS04660 0.77 -4.1 974,960 + ABZR87_RS04660 0.77 +1.0 974,960 + ABZR87_RS04660 0.77 +0.4 974,960 + ABZR87_RS04660 0.77 -1.2 974,960 + ABZR87_RS04660 0.77 +0.4 974,961 - ABZR87_RS04660 0.78 -2.9 974,961 - ABZR87_RS04660 0.78 -1.8 974,961 - ABZR87_RS04660 0.78 -0.4 974,961 - ABZR87_RS04660 0.78 +1.3 974,961 - ABZR87_RS04660 0.78 -0.1 974,961 - ABZR87_RS04660 0.78 -2.4 974,985 - ABZR87_RS04660 0.80 +1.2 975,062 + ABZR87_RS04660 0.90 -0.4 975,062 + ABZR87_RS04660 0.90 +0.1 975,062 + ABZR87_RS04660 0.90 +1.8 975,063 - ABZR87_RS04660 0.90 -2.1 975,063 - ABZR87_RS04660 0.90 +4.3 975,090 - -2.3 975,098 + +1.9 975,098 + +1.5 975,098 + +0.9 975,099 - -0.3 975,099 - +0.9 975,099 - -1.1 975,099 - +1.1 975,166 + +2.1 975,167 - +1.3 975,167 - -0.1 975,167 - +0.1 975,167 - +1.1
Or see this region's nucleotide sequence