Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03330 and ABZR87_RS03335 are separated by 102 nucleotides ABZR87_RS03335 and ABZR87_RS03340 are separated by 12 nucleotides ABZR87_RS03340 and ABZR87_RS03345 are separated by 125 nucleotides ABZR87_RS03345 and ABZR87_RS03350 are separated by 124 nucleotides ABZR87_RS03350 and ABZR87_RS03355 overlap by 10 nucleotides
ABZR87_RS03330: ABZR87_RS03330 - MarR family transcriptional regulator, at 702,748 to 703,215
_RS03330
ABZR87_RS03335: ABZR87_RS03335 - hypothetical protein, at 703,318 to 703,671
_RS03335
ABZR87_RS03340: ABZR87_RS03340 - VOC family protein, at 703,684 to 704,076
_RS03340
ABZR87_RS03345: ABZR87_RS03345 - cupin domain-containing protein, at 704,202 to 704,693
_RS03345
ABZR87_RS03350: ABZR87_RS03350 - LysM domain-containing protein, at 704,818 to 705,561
_RS03350
ABZR87_RS03355: ABZR87_RS03355 - hypothetical protein, at 705,552 to 705,965
_RS03355
Position (kb) 704
705 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 703.224 kb on - strand at 703.228 kb on + strand at 703.258 kb on - strand at 703.568 kb on + strand, within ABZR87_RS03335 at 703.568 kb on + strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.569 kb on - strand, within ABZR87_RS03335 at 703.660 kb on + strand at 703.660 kb on + strand at 703.660 kb on + strand at 703.660 kb on + strand at 703.661 kb on - strand at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.744 kb on + strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.745 kb on - strand, within ABZR87_RS03340 at 703.747 kb on - strand, within ABZR87_RS03340 at 703.747 kb on - strand, within ABZR87_RS03340 at 703.747 kb on - strand, within ABZR87_RS03340 at 704.008 kb on + strand, within ABZR87_RS03340 at 704.008 kb on + strand, within ABZR87_RS03340 at 704.008 kb on + strand, within ABZR87_RS03340 at 704.009 kb on - strand, within ABZR87_RS03340 at 704.115 kb on + strand at 704.115 kb on + strand at 704.115 kb on + strand at 704.115 kb on + strand at 704.116 kb on - strand at 704.116 kb on - strand at 704.116 kb on - strand at 704.382 kb on + strand, within ABZR87_RS03345 at 704.382 kb on + strand, within ABZR87_RS03345 at 704.383 kb on - strand, within ABZR87_RS03345 at 704.383 kb on - strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.409 kb on + strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.410 kb on - strand, within ABZR87_RS03345 at 704.439 kb on + strand, within ABZR87_RS03345 at 704.440 kb on - strand, within ABZR87_RS03345 at 704.440 kb on - strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.502 kb on + strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.503 kb on - strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.592 kb on + strand, within ABZR87_RS03345 at 704.593 kb on - strand, within ABZR87_RS03345 at 704.593 kb on - strand, within ABZR87_RS03345 at 704.593 kb on - strand, within ABZR87_RS03345 at 704.655 kb on + strand at 704.655 kb on + strand at 704.655 kb on + strand at 704.655 kb on + strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.656 kb on - strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.737 kb on + strand at 704.741 kb on + strand at 704.741 kb on + strand at 704.741 kb on + strand at 704.741 kb on + strand at 704.741 kb on + strand at 704.742 kb on - strand at 704.742 kb on - strand at 704.742 kb on - strand at 704.742 kb on - strand at 704.742 kb on - strand at 704.742 kb on - strand at 704.742 kb on - strand at 704.872 kb on + strand at 704.872 kb on + strand at 704.872 kb on + strand at 704.872 kb on + strand at 704.873 kb on - strand at 704.873 kb on - strand at 704.873 kb on - strand at 704.873 kb on - strand at 704.873 kb on - strand at 704.914 kb on + strand, within ABZR87_RS03350 at 704.915 kb on - strand, within ABZR87_RS03350 at 704.915 kb on - strand, within ABZR87_RS03350 at 704.947 kb on + strand, within ABZR87_RS03350 at 704.947 kb on + strand, within ABZR87_RS03350 at 704.947 kb on + strand, within ABZR87_RS03350 at 704.948 kb on - strand, within ABZR87_RS03350 at 704.948 kb on - strand, within ABZR87_RS03350 at 704.948 kb on - strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.096 kb on + strand, within ABZR87_RS03350 at 705.097 kb on - strand, within ABZR87_RS03350 at 705.097 kb on - strand, within ABZR87_RS03350 at 705.277 kb on + strand, within ABZR87_RS03350 at 705.277 kb on + strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.278 kb on - strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.303 kb on + strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.304 kb on - strand, within ABZR87_RS03350 at 705.403 kb on + strand, within ABZR87_RS03350 at 705.403 kb on + strand, within ABZR87_RS03350 at 705.403 kb on + strand, within ABZR87_RS03350 at 705.404 kb on - strand, within ABZR87_RS03350 at 705.433 kb on - strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.475 kb on + strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.476 kb on - strand, within ABZR87_RS03350 at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.496 kb on + strand at 705.497 kb on - strand at 705.497 kb on - strand at 705.514 kb on + strand at 705.514 kb on + strand at 705.515 kb on - strand at 705.515 kb on - strand at 705.515 kb on - strand at 705.515 kb on - strand at 705.559 kb on + strand at 705.559 kb on + strand at 705.560 kb on - strand at 705.560 kb on - strand at 705.560 kb on - strand at 705.618 kb on - strand, within ABZR87_RS03355 at 705.657 kb on + strand, within ABZR87_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 703,224 - -1.0 703,228 + +0.5 703,258 - -2.7 703,568 + ABZR87_RS03335 0.71 -2.1 703,568 + ABZR87_RS03335 0.71 -3.3 703,569 - ABZR87_RS03335 0.71 +0.6 703,569 - ABZR87_RS03335 0.71 +0.2 703,569 - ABZR87_RS03335 0.71 -2.4 703,660 + +0.7 703,660 + +0.0 703,660 + -3.4 703,660 + -1.6 703,661 - -3.0 703,744 + ABZR87_RS03340 0.15 -0.1 703,744 + ABZR87_RS03340 0.15 +0.0 703,744 + ABZR87_RS03340 0.15 -0.3 703,744 + ABZR87_RS03340 0.15 -0.2 703,744 + ABZR87_RS03340 0.15 -1.4 703,744 + ABZR87_RS03340 0.15 -2.0 703,744 + ABZR87_RS03340 0.15 -1.9 703,744 + ABZR87_RS03340 0.15 -0.0 703,744 + ABZR87_RS03340 0.15 +1.2 703,744 + ABZR87_RS03340 0.15 +1.9 703,744 + ABZR87_RS03340 0.15 -0.7 703,744 + ABZR87_RS03340 0.15 +0.7 703,744 + ABZR87_RS03340 0.15 +0.8 703,744 + ABZR87_RS03340 0.15 +0.5 703,744 + ABZR87_RS03340 0.15 -0.9 703,745 - ABZR87_RS03340 0.16 -1.6 703,745 - ABZR87_RS03340 0.16 +1.6 703,745 - ABZR87_RS03340 0.16 +0.9 703,745 - ABZR87_RS03340 0.16 -1.6 703,745 - ABZR87_RS03340 0.16 -0.7 703,745 - ABZR87_RS03340 0.16 +0.4 703,745 - ABZR87_RS03340 0.16 -0.0 703,745 - ABZR87_RS03340 0.16 -0.5 703,745 - ABZR87_RS03340 0.16 +0.6 703,745 - ABZR87_RS03340 0.16 +0.8 703,745 - ABZR87_RS03340 0.16 +1.4 703,745 - ABZR87_RS03340 0.16 +0.6 703,745 - ABZR87_RS03340 0.16 +0.6 703,747 - ABZR87_RS03340 0.16 -0.1 703,747 - ABZR87_RS03340 0.16 -1.1 703,747 - ABZR87_RS03340 0.16 +0.2 704,008 + ABZR87_RS03340 0.82 +1.9 704,008 + ABZR87_RS03340 0.82 -2.0 704,008 + ABZR87_RS03340 0.82 +1.8 704,009 - ABZR87_RS03340 0.83 -1.5 704,115 + -1.8 704,115 + +0.6 704,115 + +1.2 704,115 + +0.4 704,116 - -0.1 704,116 - +1.4 704,116 - -3.0 704,382 + ABZR87_RS03345 0.37 +0.8 704,382 + ABZR87_RS03345 0.37 +0.5 704,383 - ABZR87_RS03345 0.37 -0.2 704,383 - ABZR87_RS03345 0.37 +0.8 704,409 + ABZR87_RS03345 0.42 -1.2 704,409 + ABZR87_RS03345 0.42 +0.7 704,409 + ABZR87_RS03345 0.42 +0.6 704,409 + ABZR87_RS03345 0.42 -1.8 704,409 + ABZR87_RS03345 0.42 +2.1 704,409 + ABZR87_RS03345 0.42 -3.5 704,409 + ABZR87_RS03345 0.42 -3.3 704,409 + ABZR87_RS03345 0.42 -0.6 704,410 - ABZR87_RS03345 0.42 -0.8 704,410 - ABZR87_RS03345 0.42 +1.9 704,410 - ABZR87_RS03345 0.42 -1.1 704,410 - ABZR87_RS03345 0.42 +1.3 704,410 - ABZR87_RS03345 0.42 -2.3 704,410 - ABZR87_RS03345 0.42 +1.2 704,410 - ABZR87_RS03345 0.42 -0.9 704,410 - ABZR87_RS03345 0.42 +0.7 704,410 - ABZR87_RS03345 0.42 +1.7 704,410 - ABZR87_RS03345 0.42 +1.5 704,410 - ABZR87_RS03345 0.42 -1.9 704,410 - ABZR87_RS03345 0.42 +1.0 704,410 - ABZR87_RS03345 0.42 -1.0 704,439 + ABZR87_RS03345 0.48 +2.2 704,440 - ABZR87_RS03345 0.48 +1.2 704,440 - ABZR87_RS03345 0.48 +3.1 704,502 + ABZR87_RS03345 0.61 +0.6 704,502 + ABZR87_RS03345 0.61 -1.7 704,502 + ABZR87_RS03345 0.61 -0.8 704,502 + ABZR87_RS03345 0.61 -0.5 704,502 + ABZR87_RS03345 0.61 -3.5 704,502 + ABZR87_RS03345 0.61 +0.4 704,502 + ABZR87_RS03345 0.61 +0.8 704,502 + ABZR87_RS03345 0.61 +0.2 704,502 + ABZR87_RS03345 0.61 +1.0 704,503 - ABZR87_RS03345 0.61 +1.6 704,503 - ABZR87_RS03345 0.61 -1.1 704,503 - ABZR87_RS03345 0.61 +1.0 704,503 - ABZR87_RS03345 0.61 +1.3 704,503 - ABZR87_RS03345 0.61 -1.5 704,503 - ABZR87_RS03345 0.61 +0.5 704,592 + ABZR87_RS03345 0.79 +0.4 704,592 + ABZR87_RS03345 0.79 -3.1 704,592 + ABZR87_RS03345 0.79 +3.5 704,592 + ABZR87_RS03345 0.79 -0.0 704,592 + ABZR87_RS03345 0.79 +0.1 704,592 + ABZR87_RS03345 0.79 +2.3 704,593 - ABZR87_RS03345 0.79 +1.1 704,593 - ABZR87_RS03345 0.79 -1.4 704,593 - ABZR87_RS03345 0.79 -0.2 704,655 + -2.0 704,655 + -0.6 704,655 + +1.8 704,655 + -1.3 704,656 - -0.7 704,656 - -3.2 704,656 - +1.1 704,656 - -1.3 704,656 - -0.4 704,737 + -1.5 704,737 + +0.6 704,737 + -2.8 704,737 + -1.4 704,741 + +1.0 704,741 + -1.0 704,741 + -0.1 704,741 + -0.4 704,741 + -1.4 704,742 - +1.0 704,742 - +2.5 704,742 - +0.9 704,742 - +0.9 704,742 - -0.9 704,742 - -2.1 704,742 - +0.2 704,872 + -1.7 704,872 + +0.4 704,872 + +0.2 704,872 + -0.4 704,873 - -3.1 704,873 - +1.3 704,873 - +0.5 704,873 - -0.4 704,873 - -0.1 704,914 + ABZR87_RS03350 0.13 +2.1 704,915 - ABZR87_RS03350 0.13 -2.6 704,915 - ABZR87_RS03350 0.13 +0.8 704,947 + ABZR87_RS03350 0.17 +0.2 704,947 + ABZR87_RS03350 0.17 +0.5 704,947 + ABZR87_RS03350 0.17 +0.9 704,948 - ABZR87_RS03350 0.17 -0.8 704,948 - ABZR87_RS03350 0.17 +0.7 704,948 - ABZR87_RS03350 0.17 -3.7 705,096 + ABZR87_RS03350 0.37 -1.1 705,096 + ABZR87_RS03350 0.37 -0.2 705,096 + ABZR87_RS03350 0.37 +2.3 705,096 + ABZR87_RS03350 0.37 -2.8 705,097 - ABZR87_RS03350 0.38 -3.8 705,097 - ABZR87_RS03350 0.38 -0.5 705,277 + ABZR87_RS03350 0.62 +1.7 705,277 + ABZR87_RS03350 0.62 +2.4 705,278 - ABZR87_RS03350 0.62 +2.7 705,278 - ABZR87_RS03350 0.62 +4.4 705,278 - ABZR87_RS03350 0.62 -0.8 705,278 - ABZR87_RS03350 0.62 +0.8 705,278 - ABZR87_RS03350 0.62 -2.5 705,278 - ABZR87_RS03350 0.62 +1.4 705,278 - ABZR87_RS03350 0.62 -1.6 705,278 - ABZR87_RS03350 0.62 -0.7 705,278 - ABZR87_RS03350 0.62 +0.9 705,303 + ABZR87_RS03350 0.65 -0.1 705,303 + ABZR87_RS03350 0.65 -2.8 705,303 + ABZR87_RS03350 0.65 +0.1 705,303 + ABZR87_RS03350 0.65 -0.5 705,303 + ABZR87_RS03350 0.65 +1.7 705,303 + ABZR87_RS03350 0.65 +0.9 705,303 + ABZR87_RS03350 0.65 -0.4 705,303 + ABZR87_RS03350 0.65 +1.0 705,304 - ABZR87_RS03350 0.65 +0.7 705,304 - ABZR87_RS03350 0.65 -0.7 705,304 - ABZR87_RS03350 0.65 +0.3 705,304 - ABZR87_RS03350 0.65 -1.5 705,304 - ABZR87_RS03350 0.65 +0.8 705,304 - ABZR87_RS03350 0.65 +2.0 705,304 - ABZR87_RS03350 0.65 -0.6 705,304 - ABZR87_RS03350 0.65 -3.6 705,304 - ABZR87_RS03350 0.65 -0.6 705,403 + ABZR87_RS03350 0.79 +1.3 705,403 + ABZR87_RS03350 0.79 +1.2 705,403 + ABZR87_RS03350 0.79 -2.8 705,404 - ABZR87_RS03350 0.79 -0.6 705,433 - ABZR87_RS03350 0.83 -0.6 705,475 + ABZR87_RS03350 0.88 -1.0 705,475 + ABZR87_RS03350 0.88 -1.4 705,475 + ABZR87_RS03350 0.88 -2.4 705,475 + ABZR87_RS03350 0.88 +0.8 705,476 - ABZR87_RS03350 0.88 +0.5 705,476 - ABZR87_RS03350 0.88 -1.6 705,476 - ABZR87_RS03350 0.88 -1.3 705,476 - ABZR87_RS03350 0.88 -3.4 705,476 - ABZR87_RS03350 0.88 +1.2 705,476 - ABZR87_RS03350 0.88 -0.5 705,496 + +0.8 705,496 + +1.8 705,496 + +0.5 705,496 + -0.6 705,496 + -0.8 705,496 + -0.9 705,497 - +0.9 705,497 - -0.1 705,514 + -2.6 705,514 + -0.1 705,515 - +0.1 705,515 - +2.0 705,515 - -0.2 705,515 - +1.9 705,559 + -0.0 705,559 + +0.2 705,560 - +0.2 705,560 - -0.5 705,560 - -2.2 705,618 - ABZR87_RS03355 0.16 -0.0 705,657 + ABZR87_RS03355 0.25 +0.2
Or see this region's nucleotide sequence