Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03220

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03210 and ABZR87_RS03215 are separated by 28 nucleotidesABZR87_RS03215 and ABZR87_RS03220 are separated by 10 nucleotidesABZR87_RS03220 and ABZR87_RS03225 overlap by 4 nucleotidesABZR87_RS03225 and ABZR87_RS03230 are separated by 91 nucleotides ABZR87_RS03210: ABZR87_RS03210 - NAD(P)/FAD-dependent oxidoreductase, at 677,081 to 678,703 _RS03210 ABZR87_RS03215: ABZR87_RS03215 - SDR family NAD(P)-dependent oxidoreductase, at 678,732 to 679,622 _RS03215 ABZR87_RS03220: ABZR87_RS03220 - alpha/beta hydrolase, at 679,633 to 680,655 _RS03220 ABZR87_RS03225: ABZR87_RS03225 - metal-dependent hydrolase, at 680,652 to 681,548 _RS03225 ABZR87_RS03230: ABZR87_RS03230 - MerR family transcriptional regulator, at 681,640 to 682,458 _RS03230 Position (kb) 679 680 681Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 678.951 kb on + strand, within ABZR87_RS03215at 678.951 kb on + strand, within ABZR87_RS03215at 678.951 kb on + strand, within ABZR87_RS03215at 678.952 kb on - strand, within ABZR87_RS03215at 679.203 kb on + strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.218 kb on + strand, within ABZR87_RS03215at 679.219 kb on - strand, within ABZR87_RS03215at 679.219 kb on - strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.439 kb on - strand, within ABZR87_RS03215at 679.621 kb on - strandat 679.621 kb on - strandat 679.621 kb on - strandat 679.621 kb on - strandat 679.765 kb on + strand, within ABZR87_RS03220at 679.816 kb on + strand, within ABZR87_RS03220at 679.816 kb on + strand, within ABZR87_RS03220at 679.816 kb on + strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.924 kb on + strand, within ABZR87_RS03220at 680.188 kb on + strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.278 kb on + strand, within ABZR87_RS03220at 680.278 kb on + strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.401 kb on - strand, within ABZR87_RS03220at 680.401 kb on - strand, within ABZR87_RS03220at 680.524 kb on + strand, within ABZR87_RS03220at 680.524 kb on + strand, within ABZR87_RS03220at 680.525 kb on - strand, within ABZR87_RS03220at 680.541 kb on + strand, within ABZR87_RS03220at 680.542 kb on - strand, within ABZR87_RS03220at 680.805 kb on + strand, within ABZR87_RS03225at 680.805 kb on + strand, within ABZR87_RS03225at 680.805 kb on + strand, within ABZR87_RS03225at 680.806 kb on - strand, within ABZR87_RS03225at 680.855 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.895 kb on + strand, within ABZR87_RS03225at 680.896 kb on - strand, within ABZR87_RS03225at 680.896 kb on - strand, within ABZR87_RS03225at 680.949 kb on - strand, within ABZR87_RS03225at 680.979 kb on + strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 680.980 kb on - strand, within ABZR87_RS03225at 681.027 kb on + strand, within ABZR87_RS03225at 681.027 kb on + strand, within ABZR87_RS03225at 681.027 kb on + strand, within ABZR87_RS03225at 681.028 kb on - strand, within ABZR87_RS03225at 681.028 kb on - strand, within ABZR87_RS03225at 681.154 kb on - strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.160 kb on + strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.161 kb on - strand, within ABZR87_RS03225at 681.195 kb on + strand, within ABZR87_RS03225at 681.196 kb on - strand, within ABZR87_RS03225at 681.234 kb on - strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.255 kb on + strand, within ABZR87_RS03225at 681.256 kb on - strand, within ABZR87_RS03225at 681.256 kb on - strand, within ABZR87_RS03225at 681.256 kb on - strand, within ABZR87_RS03225at 681.471 kb on + strandat 681.471 kb on + strandat 681.471 kb on + strandat 681.471 kb on + strandat 681.472 kb on - strandat 681.472 kb on - strandat 681.472 kb on - strandat 681.472 kb on - strandat 681.598 kb on - strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.605 kb on + strandat 681.606 kb on - strandat 681.606 kb on - strandat 681.606 kb on - strandat 681.642 kb on - strandat 681.642 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
678,951 + ABZR87_RS03215 0.25 +0.7
678,951 + ABZR87_RS03215 0.25 +2.3
678,951 + ABZR87_RS03215 0.25 +1.5
678,952 - ABZR87_RS03215 0.25 -0.6
679,203 + ABZR87_RS03215 0.53 -1.7
679,204 - ABZR87_RS03215 0.53 +1.4
679,204 - ABZR87_RS03215 0.53 +1.3
679,204 - ABZR87_RS03215 0.53 +1.6
679,218 + ABZR87_RS03215 0.55 +0.7
679,219 - ABZR87_RS03215 0.55 -2.0
679,219 - ABZR87_RS03215 0.55 +0.7
679,321 + ABZR87_RS03215 0.66 -0.3
679,321 + ABZR87_RS03215 0.66 -0.9
679,321 + ABZR87_RS03215 0.66 +1.1
679,321 + ABZR87_RS03215 0.66 +0.7
679,321 + ABZR87_RS03215 0.66 +0.4
679,321 + ABZR87_RS03215 0.66 -0.2
679,322 - ABZR87_RS03215 0.66 +0.7
679,322 - ABZR87_RS03215 0.66 -0.2
679,322 - ABZR87_RS03215 0.66 +0.3
679,322 - ABZR87_RS03215 0.66 -2.3
679,322 - ABZR87_RS03215 0.66 -1.9
679,322 - ABZR87_RS03215 0.66 +0.4
679,322 - ABZR87_RS03215 0.66 -0.9
679,438 + ABZR87_RS03215 0.79 -2.0
679,438 + ABZR87_RS03215 0.79 -1.2
679,438 + ABZR87_RS03215 0.79 +1.1
679,439 - ABZR87_RS03215 0.79 -3.3
679,621 - -1.9
679,621 - +0.1
679,621 - +3.3
679,621 - -1.2
679,765 + ABZR87_RS03220 0.13 -0.4
679,816 + ABZR87_RS03220 0.18 +0.7
679,816 + ABZR87_RS03220 0.18 -0.4
679,816 + ABZR87_RS03220 0.18 +1.7
679,817 - ABZR87_RS03220 0.18 -2.2
679,817 - ABZR87_RS03220 0.18 +0.4
679,817 - ABZR87_RS03220 0.18 -2.8
679,817 - ABZR87_RS03220 0.18 -0.8
679,887 + ABZR87_RS03220 0.25 -0.8
679,887 + ABZR87_RS03220 0.25 +0.4
679,887 + ABZR87_RS03220 0.25 +0.3
679,887 + ABZR87_RS03220 0.25 -1.7
679,887 + ABZR87_RS03220 0.25 +0.1
679,887 + ABZR87_RS03220 0.25 -2.2
679,887 + ABZR87_RS03220 0.25 +1.2
679,887 + ABZR87_RS03220 0.25 +0.7
679,888 - ABZR87_RS03220 0.25 +2.3
679,888 - ABZR87_RS03220 0.25 +3.2
679,888 - ABZR87_RS03220 0.25 +0.9
679,888 - ABZR87_RS03220 0.25 +0.0
679,888 - ABZR87_RS03220 0.25 +1.3
679,888 - ABZR87_RS03220 0.25 -2.9
679,888 - ABZR87_RS03220 0.25 -1.8
679,924 + ABZR87_RS03220 0.28 +1.9
680,188 + ABZR87_RS03220 0.54 -0.1
680,189 - ABZR87_RS03220 0.54 -2.6
680,189 - ABZR87_RS03220 0.54 -0.0
680,189 - ABZR87_RS03220 0.54 +1.9
680,189 - ABZR87_RS03220 0.54 -1.6
680,278 + ABZR87_RS03220 0.63 +0.8
680,278 + ABZR87_RS03220 0.63 -0.0
680,279 - ABZR87_RS03220 0.63 -1.7
680,279 - ABZR87_RS03220 0.63 +0.2
680,279 - ABZR87_RS03220 0.63 +0.0
680,279 - ABZR87_RS03220 0.63 +1.0
680,279 - ABZR87_RS03220 0.63 -3.4
680,279 - ABZR87_RS03220 0.63 -1.3
680,335 + ABZR87_RS03220 0.69 +2.7
680,335 + ABZR87_RS03220 0.69 -0.6
680,335 + ABZR87_RS03220 0.69 -0.3
680,335 + ABZR87_RS03220 0.69 -0.7
680,335 + ABZR87_RS03220 0.69 -3.3
680,335 + ABZR87_RS03220 0.69 -1.7
680,401 - ABZR87_RS03220 0.75 +1.2
680,401 - ABZR87_RS03220 0.75 +0.7
680,524 + ABZR87_RS03220 0.87 +1.1
680,524 + ABZR87_RS03220 0.87 -1.1
680,525 - ABZR87_RS03220 0.87 +1.3
680,541 + ABZR87_RS03220 0.89 +0.9
680,542 - ABZR87_RS03220 0.89 -0.5
680,805 + ABZR87_RS03225 0.17 +1.0
680,805 + ABZR87_RS03225 0.17 -1.6
680,805 + ABZR87_RS03225 0.17 -2.7
680,806 - ABZR87_RS03225 0.17 -3.4
680,855 + ABZR87_RS03225 0.23 +2.1
680,895 + ABZR87_RS03225 0.27 +1.1
680,895 + ABZR87_RS03225 0.27 +2.3
680,895 + ABZR87_RS03225 0.27 +0.6
680,895 + ABZR87_RS03225 0.27 +1.3
680,895 + ABZR87_RS03225 0.27 +1.0
680,895 + ABZR87_RS03225 0.27 +1.8
680,895 + ABZR87_RS03225 0.27 +1.4
680,896 - ABZR87_RS03225 0.27 +0.7
680,896 - ABZR87_RS03225 0.27 +1.3
680,949 - ABZR87_RS03225 0.33 -2.8
680,979 + ABZR87_RS03225 0.36 +1.7
680,980 - ABZR87_RS03225 0.37 -0.8
680,980 - ABZR87_RS03225 0.37 +0.4
680,980 - ABZR87_RS03225 0.37 +0.1
680,980 - ABZR87_RS03225 0.37 +0.1
681,027 + ABZR87_RS03225 0.42 +0.6
681,027 + ABZR87_RS03225 0.42 -0.1
681,027 + ABZR87_RS03225 0.42 +1.1
681,028 - ABZR87_RS03225 0.42 -2.0
681,028 - ABZR87_RS03225 0.42 +1.8
681,154 - ABZR87_RS03225 0.56 -3.9
681,160 + ABZR87_RS03225 0.57 -1.7
681,160 + ABZR87_RS03225 0.57 -0.9
681,160 + ABZR87_RS03225 0.57 +1.8
681,160 + ABZR87_RS03225 0.57 +0.7
681,160 + ABZR87_RS03225 0.57 +0.0
681,160 + ABZR87_RS03225 0.57 +0.0
681,161 - ABZR87_RS03225 0.57 +0.3
681,161 - ABZR87_RS03225 0.57 -0.5
681,161 - ABZR87_RS03225 0.57 -1.4
681,161 - ABZR87_RS03225 0.57 +0.5
681,161 - ABZR87_RS03225 0.57 +2.6
681,161 - ABZR87_RS03225 0.57 -0.1
681,161 - ABZR87_RS03225 0.57 -3.6
681,161 - ABZR87_RS03225 0.57 -1.4
681,161 - ABZR87_RS03225 0.57 +2.0
681,161 - ABZR87_RS03225 0.57 -2.2
681,161 - ABZR87_RS03225 0.57 -0.2
681,195 + ABZR87_RS03225 0.61 -1.8
681,196 - ABZR87_RS03225 0.61 -0.3
681,234 - ABZR87_RS03225 0.65 +2.3
681,255 + ABZR87_RS03225 0.67 +0.5
681,255 + ABZR87_RS03225 0.67 -3.3
681,255 + ABZR87_RS03225 0.67 +0.0
681,255 + ABZR87_RS03225 0.67 -0.7
681,255 + ABZR87_RS03225 0.67 -1.1
681,255 + ABZR87_RS03225 0.67 +3.4
681,256 - ABZR87_RS03225 0.67 -1.1
681,256 - ABZR87_RS03225 0.67 +0.8
681,256 - ABZR87_RS03225 0.67 +0.2
681,471 + -1.4
681,471 + -1.2
681,471 + +0.9
681,471 + -0.4
681,472 - +0.2
681,472 - -0.7
681,472 - -0.5
681,472 - +0.2
681,598 - +0.8
681,601 + -3.3
681,601 + +1.8
681,601 + +1.6
681,601 + -2.6
681,601 + +0.0
681,602 - -1.9
681,602 - +0.1
681,602 - -0.5
681,602 - +1.5
681,602 - -2.1
681,602 - +1.4
681,602 - +1.5
681,602 - +1.2
681,605 + +1.4
681,606 - -3.5
681,606 - +1.2
681,606 - +0.8
681,642 - -0.8
681,642 - -0.1

Or see this region's nucleotide sequence