Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02565

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02560 and ABZR87_RS02565 are separated by 175 nucleotidesABZR87_RS02565 and ABZR87_RS02570 are separated by 140 nucleotides ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984 _RS02560 ABZR87_RS02565: ABZR87_RS02565 - glutamate synthase subunit beta, at 541,160 to 542,623 _RS02565 ABZR87_RS02570: ABZR87_RS02570 - glutamate synthase-related protein, at 542,764 to 547,485 _RS02570 Position (kb) 541 542 543Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 540.317 kb on + strand, within ABZR87_RS02560at 540.410 kb on + strand, within ABZR87_RS02560at 540.410 kb on + strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.411 kb on - strand, within ABZR87_RS02560at 540.608 kb on + strand, within ABZR87_RS02560at 540.608 kb on + strand, within ABZR87_RS02560at 540.609 kb on - strand, within ABZR87_RS02560at 540.609 kb on - strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.666 kb on + strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.667 kb on - strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.736 kb on + strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.737 kb on - strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.837 kb on + strand, within ABZR87_RS02560at 540.838 kb on - strand, within ABZR87_RS02560at 541.019 kb on + strandat 541.019 kb on + strandat 541.020 kb on - strandat 541.020 kb on - strandat 541.050 kb on + strandat 541.050 kb on + strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.051 kb on - strandat 541.065 kb on + strandat 541.065 kb on + strandat 541.066 kb on - strandat 541.302 kb on + strandat 541.393 kb on + strand, within ABZR87_RS02565at 541.393 kb on + strand, within ABZR87_RS02565at 541.393 kb on + strand, within ABZR87_RS02565at 541.394 kb on - strand, within ABZR87_RS02565at 541.394 kb on - strand, within ABZR87_RS02565at 541.602 kb on + strand, within ABZR87_RS02565at 541.602 kb on + strand, within ABZR87_RS02565at 541.819 kb on - strand, within ABZR87_RS02565at 541.819 kb on - strand, within ABZR87_RS02565at 542.074 kb on - strand, within ABZR87_RS02565at 542.409 kb on + strand, within ABZR87_RS02565at 542.409 kb on + strand, within ABZR87_RS02565at 542.410 kb on - strand, within ABZR87_RS02565at 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.544 kb on + strandat 542.545 kb on - strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.574 kb on + strandat 542.575 kb on - strandat 542.575 kb on - strandat 542.706 kb on + strandat 542.706 kb on + strandat 542.706 kb on + strandat 542.706 kb on + strandat 542.707 kb on - strandat 542.707 kb on - strandat 542.807 kb on + strandat 542.807 kb on + strandat 542.807 kb on + strandat 542.807 kb on + strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.808 kb on - strandat 542.831 kb on + strandat 542.831 kb on + strandat 542.832 kb on - strandat 542.916 kb on - strandat 543.092 kb on + strandat 543.092 kb on + strandat 543.092 kb on + strandat 543.093 kb on - strandat 543.093 kb on - strandat 543.098 kb on + strandat 543.099 kb on - strandat 543.099 kb on - strandat 543.099 kb on - strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.176 kb on + strandat 543.177 kb on - strandat 543.177 kb on - strandat 543.177 kb on - strandat 543.177 kb on - strandat 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.392 kb on + strand, within ABZR87_RS02570at 543.393 kb on - strand, within ABZR87_RS02570

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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540,317 + ABZR87_RS02560 0.35 -2.1
540,410 + ABZR87_RS02560 0.44 +0.4
540,410 + ABZR87_RS02560 0.44 +0.8
540,411 - ABZR87_RS02560 0.44 +2.0
540,411 - ABZR87_RS02560 0.44 +1.6
540,411 - ABZR87_RS02560 0.44 -0.3
540,608 + ABZR87_RS02560 0.63 -0.4
540,608 + ABZR87_RS02560 0.63 -1.2
540,609 - ABZR87_RS02560 0.64 -0.8
540,609 - ABZR87_RS02560 0.64 +2.6
540,666 + ABZR87_RS02560 0.69 +3.0
540,666 + ABZR87_RS02560 0.69 +1.6
540,666 + ABZR87_RS02560 0.69 -1.8
540,666 + ABZR87_RS02560 0.69 -0.5
540,666 + ABZR87_RS02560 0.69 -2.6
540,666 + ABZR87_RS02560 0.69 -0.1
540,666 + ABZR87_RS02560 0.69 +1.2
540,666 + ABZR87_RS02560 0.69 -1.7
540,666 + ABZR87_RS02560 0.69 -1.1
540,666 + ABZR87_RS02560 0.69 -1.5
540,666 + ABZR87_RS02560 0.69 -3.3
540,666 + ABZR87_RS02560 0.69 +2.3
540,666 + ABZR87_RS02560 0.69 -0.4
540,667 - ABZR87_RS02560 0.69 +0.6
540,667 - ABZR87_RS02560 0.69 -2.7
540,667 - ABZR87_RS02560 0.69 +2.8
540,667 - ABZR87_RS02560 0.69 +3.4
540,667 - ABZR87_RS02560 0.69 +1.2
540,736 + ABZR87_RS02560 0.76 -1.2
540,736 + ABZR87_RS02560 0.76 +1.6
540,736 + ABZR87_RS02560 0.76 -0.6
540,737 - ABZR87_RS02560 0.76 -2.2
540,737 - ABZR87_RS02560 0.76 +2.0
540,737 - ABZR87_RS02560 0.76 +0.5
540,837 + ABZR87_RS02560 0.86 +0.5
540,837 + ABZR87_RS02560 0.86 +1.1
540,837 + ABZR87_RS02560 0.86 +0.1
540,838 - ABZR87_RS02560 0.86 +0.7
541,019 + +1.6
541,019 + -1.4
541,020 - -1.9
541,020 - -0.7
541,050 + -1.5
541,050 + -2.5
541,051 - -0.9
541,051 - +0.5
541,051 - -3.3
541,051 - -1.2
541,065 + -1.1
541,065 + +1.5
541,066 - +0.7
541,302 + -3.9
541,393 + ABZR87_RS02565 0.16 -0.1
541,393 + ABZR87_RS02565 0.16 -2.3
541,393 + ABZR87_RS02565 0.16 -2.2
541,394 - ABZR87_RS02565 0.16 -1.9
541,394 - ABZR87_RS02565 0.16 -3.1
541,602 + ABZR87_RS02565 0.30 -3.0
541,602 + ABZR87_RS02565 0.30 -1.8
541,819 - ABZR87_RS02565 0.45 -1.9
541,819 - ABZR87_RS02565 0.45 -3.5
542,074 - ABZR87_RS02565 0.62 -2.1
542,409 + ABZR87_RS02565 0.85 -2.8
542,409 + ABZR87_RS02565 0.85 -3.9
542,410 - ABZR87_RS02565 0.85 -0.1
542,544 + -2.0
542,544 + -3.1
542,544 + -2.5
542,544 + -1.7
542,544 + -2.6
542,544 + -2.7
542,545 - +0.2
542,574 + -2.6
542,574 + -1.9
542,574 + +0.2
542,574 + -0.2
542,574 + -1.3
542,574 + -3.8
542,574 + -3.3
542,575 - -2.3
542,575 - -0.4
542,706 + +2.0
542,706 + -3.3
542,706 + -2.9
542,706 + -2.0
542,707 - -2.3
542,707 - +3.9
542,807 + -3.8
542,807 + -0.8
542,807 + -1.9
542,807 + -3.0
542,808 - +1.6
542,808 - -0.2
542,808 - -2.0
542,808 - -0.1
542,808 - +0.6
542,808 - -0.3
542,808 - -1.3
542,831 + -4.7
542,831 + -1.9
542,832 - +1.5
542,916 - +1.1
543,092 + -1.3
543,092 + -2.3
543,092 + -2.3
543,093 - -1.9
543,093 - -3.3
543,098 + -3.0
543,099 - -1.2
543,099 - -2.8
543,099 - -0.8
543,176 + -0.7
543,176 + -2.5
543,176 + -1.4
543,176 + -1.7
543,176 + +0.1
543,176 + -0.6
543,176 + -4.8
543,176 + -1.2
543,177 - -1.8
543,177 - -0.7
543,177 - -2.6
543,177 - -2.0
543,392 + ABZR87_RS02570 0.13 -3.3
543,392 + ABZR87_RS02570 0.13 -2.8
543,392 + ABZR87_RS02570 0.13 -3.9
543,392 + ABZR87_RS02570 0.13 -3.0
543,392 + ABZR87_RS02570 0.13 +0.6
543,392 + ABZR87_RS02570 0.13 -2.9
543,392 + ABZR87_RS02570 0.13 -0.9
543,392 + ABZR87_RS02570 0.13 -3.8
543,393 - ABZR87_RS02570 0.13 -3.2

Or see this region's nucleotide sequence