Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02100 and ABZR87_RS02105 are separated by 4 nucleotides ABZR87_RS02105 and ABZR87_RS02110 are separated by 204 nucleotides ABZR87_RS02110 and ABZR87_RS02115 are separated by 16 nucleotides
ABZR87_RS02100: ABZR87_RS02100 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG, at 452,512 to 453,300
_RS02100
ABZR87_RS02105: ABZR87_RS02105 - hydroxyphenylacetyl-CoA thioesterase PaaI, at 453,305 to 453,772
_RS02105
ABZR87_RS02110: ABZR87_RS02110 - phenylacetate--CoA ligase PaaK, at 453,977 to 455,281
_RS02110
ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452
_RS02115
Position (kb) 453
454
455
456 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 453.241 kb on + strand at 453.278 kb on + strand at 453.278 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.431 kb on + strand, within ABZR87_RS02105 at 453.432 kb on - strand, within ABZR87_RS02105 at 453.432 kb on - strand, within ABZR87_RS02105 at 453.548 kb on - strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.670 kb on - strand, within ABZR87_RS02105 at 453.681 kb on - strand, within ABZR87_RS02105 at 453.771 kb on - strand at 453.785 kb on - strand at 453.785 kb on - strand at 453.785 kb on - strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.816 kb on + strand at 453.816 kb on + strand at 453.817 kb on - strand at 453.817 kb on - strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.894 kb on + strand at 453.895 kb on - strand at 453.932 kb on + strand at 453.932 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.299 kb on - strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.391 kb on + strand, within ABZR87_RS02110 at 454.392 kb on - strand, within ABZR87_RS02110 at 454.392 kb on - strand, within ABZR87_RS02110 at 454.397 kb on + strand, within ABZR87_RS02110 at 454.398 kb on - strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.690 kb on + strand, within ABZR87_RS02110 at 454.690 kb on + strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.694 kb on + strand, within ABZR87_RS02110 at 454.694 kb on + strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.781 kb on + strand, within ABZR87_RS02110 at 454.781 kb on + strand, within ABZR87_RS02110 at 454.781 kb on + strand, within ABZR87_RS02110 at 454.782 kb on - strand, within ABZR87_RS02110 at 455.057 kb on + strand, within ABZR87_RS02110 at 455.058 kb on - strand, within ABZR87_RS02110 at 455.058 kb on - strand, within ABZR87_RS02110 at 455.092 kb on + strand, within ABZR87_RS02110 at 455.092 kb on + strand, within ABZR87_RS02110 at 455.093 kb on - strand, within ABZR87_RS02110 at 455.093 kb on - strand, within ABZR87_RS02110 at 455.279 kb on + strand at 455.407 kb on + strand at 455.407 kb on + strand at 455.407 kb on + strand at 455.407 kb on + strand at 455.407 kb on + strand at 455.407 kb on + strand at 455.407 kb on + strand at 455.408 kb on - strand at 455.408 kb on - strand at 455.408 kb on - strand at 455.408 kb on - strand at 455.408 kb on - strand at 455.408 kb on - strand at 455.410 kb on + strand at 455.410 kb on + strand at 455.411 kb on - strand at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.632 kb on + strand, within ABZR87_RS02115 at 455.632 kb on + strand, within ABZR87_RS02115 at 455.633 kb on - strand, within ABZR87_RS02115 at 455.633 kb on - strand, within ABZR87_RS02115 at 455.724 kb on - strand, within ABZR87_RS02115 at 455.968 kb on + strand, within ABZR87_RS02115 at 455.968 kb on + strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.029 kb on - strand, within ABZR87_RS02115 at 456.029 kb on - strand, within ABZR87_RS02115 at 456.260 kb on + strand, within ABZR87_RS02115 at 456.261 kb on - strand, within ABZR87_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 453,241 + +0.5 453,278 + -0.4 453,278 + +2.5 453,298 + +2.4 453,298 + +1.0 453,298 + -1.3 453,298 + -0.3 453,299 - -2.1 453,299 - +1.2 453,299 - +1.7 453,299 - +3.2 453,431 + ABZR87_RS02105 0.27 -0.3 453,432 - ABZR87_RS02105 0.27 -0.5 453,432 - ABZR87_RS02105 0.27 +1.7 453,548 - ABZR87_RS02105 0.52 -0.3 453,662 + ABZR87_RS02105 0.76 +0.7 453,662 + ABZR87_RS02105 0.76 +0.9 453,662 + ABZR87_RS02105 0.76 -0.3 453,662 + ABZR87_RS02105 0.76 -1.2 453,662 + ABZR87_RS02105 0.76 -0.9 453,662 + ABZR87_RS02105 0.76 +1.0 453,663 - ABZR87_RS02105 0.76 -1.1 453,663 - ABZR87_RS02105 0.76 +0.1 453,663 - ABZR87_RS02105 0.76 +0.7 453,663 - ABZR87_RS02105 0.76 +1.3 453,663 - ABZR87_RS02105 0.76 -1.8 453,663 - ABZR87_RS02105 0.76 -0.5 453,663 - ABZR87_RS02105 0.76 +0.8 453,663 - ABZR87_RS02105 0.76 +0.4 453,669 + ABZR87_RS02105 0.78 -2.1 453,669 + ABZR87_RS02105 0.78 +1.8 453,669 + ABZR87_RS02105 0.78 +2.1 453,669 + ABZR87_RS02105 0.78 -1.6 453,669 + ABZR87_RS02105 0.78 +1.0 453,669 + ABZR87_RS02105 0.78 -1.9 453,670 - ABZR87_RS02105 0.78 +1.7 453,681 - ABZR87_RS02105 0.80 +1.4 453,771 - +0.6 453,785 - +1.2 453,785 - +0.5 453,785 - +1.2 453,786 + -1.6 453,786 + +2.8 453,786 + -2.7 453,786 + -2.7 453,786 + -0.9 453,786 + +0.5 453,786 + -0.4 453,786 + -2.2 453,786 + +1.7 453,786 + +0.1 453,786 + +0.4 453,786 + +0.9 453,786 + -1.3 453,787 - -2.9 453,787 - -2.8 453,787 - -0.6 453,787 - +1.6 453,787 - +1.5 453,787 - -0.6 453,816 + -0.1 453,816 + -0.1 453,817 - -3.3 453,817 - +1.3 453,886 + +0.4 453,886 + +1.3 453,886 + -0.1 453,886 + -0.6 453,886 + +2.2 453,886 + +0.4 453,886 + -0.4 453,886 + -0.1 453,886 + +2.0 453,886 + +1.7 453,886 + -1.1 453,886 + -2.9 453,886 + +0.3 453,886 + +0.8 453,886 + +3.0 453,886 + -0.9 453,886 + +1.0 453,886 + -0.2 453,886 + -1.6 453,887 - -1.7 453,887 - -2.4 453,887 - +1.5 453,887 - +0.9 453,887 - -2.1 453,887 - +1.2 453,887 - +0.1 453,887 - -2.6 453,887 - -1.4 453,887 - +0.8 453,887 - +1.0 453,887 - +0.3 453,887 - +0.5 453,887 - -0.7 453,887 - +0.6 453,887 - +1.8 453,887 - -1.8 453,887 - -0.3 453,894 + -0.4 453,895 - -1.1 453,932 + -1.2 453,932 + +1.2 454,085 + +0.6 454,085 + +0.8 454,085 + +2.6 454,085 + +0.6 454,085 + -1.1 454,085 + -0.1 454,085 + -1.4 454,086 - -0.2 454,086 - -1.2 454,086 - +0.2 454,086 - -0.2 454,086 - +0.1 454,208 + ABZR87_RS02110 0.18 +0.6 454,208 + ABZR87_RS02110 0.18 -2.4 454,208 + ABZR87_RS02110 0.18 -3.3 454,208 + ABZR87_RS02110 0.18 +1.9 454,208 + ABZR87_RS02110 0.18 -3.9 454,209 - ABZR87_RS02110 0.18 -2.9 454,209 - ABZR87_RS02110 0.18 -2.4 454,209 - ABZR87_RS02110 0.18 -2.0 454,209 - ABZR87_RS02110 0.18 +1.8 454,209 - ABZR87_RS02110 0.18 -0.3 454,299 - ABZR87_RS02110 0.25 -3.4 454,318 + ABZR87_RS02110 0.26 -2.2 454,318 + ABZR87_RS02110 0.26 -1.6 454,318 + ABZR87_RS02110 0.26 +0.7 454,318 + ABZR87_RS02110 0.26 +1.9 454,318 + ABZR87_RS02110 0.26 +1.5 454,318 + ABZR87_RS02110 0.26 +1.2 454,318 + ABZR87_RS02110 0.26 +2.3 454,318 + ABZR87_RS02110 0.26 -0.3 454,318 + ABZR87_RS02110 0.26 +0.9 454,318 + ABZR87_RS02110 0.26 -0.0 454,319 - ABZR87_RS02110 0.26 -0.6 454,319 - ABZR87_RS02110 0.26 +1.5 454,319 - ABZR87_RS02110 0.26 -0.2 454,319 - ABZR87_RS02110 0.26 -2.1 454,319 - ABZR87_RS02110 0.26 +1.2 454,319 - ABZR87_RS02110 0.26 +1.4 454,319 - ABZR87_RS02110 0.26 -0.1 454,391 + ABZR87_RS02110 0.32 -0.1 454,392 - ABZR87_RS02110 0.32 +1.1 454,392 - ABZR87_RS02110 0.32 -2.7 454,397 + ABZR87_RS02110 0.32 +1.4 454,398 - ABZR87_RS02110 0.32 -1.4 454,544 + ABZR87_RS02110 0.43 +0.3 454,544 + ABZR87_RS02110 0.43 +0.7 454,544 + ABZR87_RS02110 0.43 +0.3 454,544 + ABZR87_RS02110 0.43 +0.2 454,544 + ABZR87_RS02110 0.43 -3.3 454,544 + ABZR87_RS02110 0.43 -3.0 454,544 + ABZR87_RS02110 0.43 -0.0 454,544 + ABZR87_RS02110 0.43 +0.1 454,544 + ABZR87_RS02110 0.43 +0.4 454,545 - ABZR87_RS02110 0.44 -1.1 454,545 - ABZR87_RS02110 0.44 -0.8 454,545 - ABZR87_RS02110 0.44 +1.0 454,545 - ABZR87_RS02110 0.44 +0.4 454,545 - ABZR87_RS02110 0.44 +1.8 454,545 - ABZR87_RS02110 0.44 +1.0 454,545 - ABZR87_RS02110 0.44 +0.7 454,545 - ABZR87_RS02110 0.44 -0.1 454,545 - ABZR87_RS02110 0.44 -0.5 454,545 - ABZR87_RS02110 0.44 -0.3 454,690 + ABZR87_RS02110 0.55 -2.3 454,690 + ABZR87_RS02110 0.55 -0.4 454,691 - ABZR87_RS02110 0.55 +2.2 454,691 - ABZR87_RS02110 0.55 -0.2 454,691 - ABZR87_RS02110 0.55 -0.5 454,691 - ABZR87_RS02110 0.55 +1.7 454,691 - ABZR87_RS02110 0.55 -0.5 454,694 + ABZR87_RS02110 0.55 +2.0 454,694 + ABZR87_RS02110 0.55 +0.0 454,695 - ABZR87_RS02110 0.55 -0.1 454,695 - ABZR87_RS02110 0.55 +0.9 454,695 - ABZR87_RS02110 0.55 -0.5 454,695 - ABZR87_RS02110 0.55 -0.0 454,695 - ABZR87_RS02110 0.55 -1.0 454,781 + ABZR87_RS02110 0.62 -0.1 454,781 + ABZR87_RS02110 0.62 +2.7 454,781 + ABZR87_RS02110 0.62 +2.5 454,782 - ABZR87_RS02110 0.62 +0.3 455,057 + ABZR87_RS02110 0.83 +1.7 455,058 - ABZR87_RS02110 0.83 -2.0 455,058 - ABZR87_RS02110 0.83 +0.7 455,092 + ABZR87_RS02110 0.85 -0.5 455,092 + ABZR87_RS02110 0.85 +0.9 455,093 - ABZR87_RS02110 0.86 -4.1 455,093 - ABZR87_RS02110 0.86 +2.4 455,279 + +0.4 455,407 + +1.4 455,407 + +1.2 455,407 + +0.0 455,407 + -2.5 455,407 + -0.1 455,407 + +1.7 455,407 + -1.3 455,408 - +2.2 455,408 - +3.1 455,408 - +0.2 455,408 - +0.3 455,408 - +1.8 455,408 - -2.6 455,410 + -0.9 455,410 + +1.6 455,411 - +1.4 455,533 + ABZR87_RS02115 0.20 -1.2 455,533 + ABZR87_RS02115 0.20 -1.2 455,533 + ABZR87_RS02115 0.20 +1.5 455,533 + ABZR87_RS02115 0.20 +1.7 455,533 + ABZR87_RS02115 0.20 -1.9 455,533 + ABZR87_RS02115 0.20 +1.2 455,533 + ABZR87_RS02115 0.20 +2.1 455,534 - ABZR87_RS02115 0.20 -0.0 455,534 - ABZR87_RS02115 0.20 -0.4 455,534 - ABZR87_RS02115 0.20 -2.2 455,534 - ABZR87_RS02115 0.20 +2.7 455,632 + ABZR87_RS02115 0.29 -1.5 455,632 + ABZR87_RS02115 0.29 +0.4 455,633 - ABZR87_RS02115 0.29 +1.9 455,633 - ABZR87_RS02115 0.29 +1.4 455,724 - ABZR87_RS02115 0.37 +1.7 455,968 + ABZR87_RS02115 0.58 -0.2 455,968 + ABZR87_RS02115 0.58 -0.8 455,984 - ABZR87_RS02115 0.59 -0.1 455,984 - ABZR87_RS02115 0.59 +1.7 455,984 - ABZR87_RS02115 0.59 -0.1 455,984 - ABZR87_RS02115 0.59 +1.0 456,025 + ABZR87_RS02115 0.63 +2.4 456,025 + ABZR87_RS02115 0.63 -0.4 456,025 + ABZR87_RS02115 0.63 -2.1 456,025 + ABZR87_RS02115 0.63 +1.4 456,025 + ABZR87_RS02115 0.63 -2.6 456,025 + ABZR87_RS02115 0.63 +2.3 456,026 - ABZR87_RS02115 0.63 +2.0 456,026 - ABZR87_RS02115 0.63 +1.0 456,026 - ABZR87_RS02115 0.63 +1.5 456,026 - ABZR87_RS02115 0.63 +3.2 456,026 - ABZR87_RS02115 0.63 +0.1 456,029 - ABZR87_RS02115 0.63 -0.1 456,029 - ABZR87_RS02115 0.63 +1.9 456,260 + ABZR87_RS02115 0.83 +1.7 456,261 - ABZR87_RS02115 0.83 -0.1
Or see this region's nucleotide sequence