Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01850

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01845 and ABZR87_RS01850 are separated by 44 nucleotidesABZR87_RS01850 and ABZR87_RS01855 overlap by 1 nucleotidesABZR87_RS01855 and ABZR87_RS01860 are separated by 13 nucleotides ABZR87_RS01845: ABZR87_RS01845 - type IV-A pilus assembly ATPase PilB, at 391,072 to 392,799 _RS01845 ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109 _RS01850 ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990 _RS01855 ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618 _RS01860 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 392.101 kb on + strand, within ABZR87_RS01845at 392.101 kb on + strand, within ABZR87_RS01845at 392.101 kb on + strand, within ABZR87_RS01845at 392.101 kb on + strand, within ABZR87_RS01845at 392.102 kb on - strand, within ABZR87_RS01845at 392.102 kb on - strand, within ABZR87_RS01845at 392.102 kb on - strand, within ABZR87_RS01845at 392.102 kb on - strand, within ABZR87_RS01845at 392.304 kb on + strand, within ABZR87_RS01845at 392.304 kb on + strand, within ABZR87_RS01845at 392.305 kb on - strand, within ABZR87_RS01845at 392.560 kb on + strand, within ABZR87_RS01845at 392.560 kb on + strand, within ABZR87_RS01845at 392.561 kb on - strand, within ABZR87_RS01845at 392.561 kb on - strand, within ABZR87_RS01845at 392.599 kb on + strand, within ABZR87_RS01845at 392.599 kb on + strand, within ABZR87_RS01845at 392.600 kb on - strand, within ABZR87_RS01845at 392.600 kb on - strand, within ABZR87_RS01845at 392.600 kb on - strand, within ABZR87_RS01845at 392.620 kb on + strand, within ABZR87_RS01845at 392.620 kb on + strand, within ABZR87_RS01845at 392.620 kb on + strand, within ABZR87_RS01845at 392.620 kb on + strand, within ABZR87_RS01845at 392.620 kb on + strand, within ABZR87_RS01845at 392.621 kb on - strand, within ABZR87_RS01845at 392.621 kb on - strand, within ABZR87_RS01845at 392.621 kb on - strand, within ABZR87_RS01845at 392.621 kb on - strand, within ABZR87_RS01845at 392.621 kb on - strand, within ABZR87_RS01845at 392.621 kb on - strand, within ABZR87_RS01845at 392.797 kb on + strandat 392.798 kb on - strandat 392.832 kb on + strandat 392.833 kb on - strandat 392.833 kb on - strandat 392.925 kb on + strandat 392.925 kb on + strandat 392.925 kb on + strandat 392.925 kb on + strandat 392.925 kb on + strandat 392.926 kb on - strandat 392.926 kb on - strandat 392.926 kb on - strandat 392.926 kb on - strandat 392.926 kb on - strandat 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.099 kb on + strand, within ABZR87_RS01850at 393.100 kb on - strand, within ABZR87_RS01850at 393.100 kb on - strand, within ABZR87_RS01850at 393.273 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.288 kb on + strand, within ABZR87_RS01850at 393.289 kb on - strand, within ABZR87_RS01850at 393.289 kb on - strand, within ABZR87_RS01850at 393.289 kb on - strand, within ABZR87_RS01850at 393.357 kb on + strand, within ABZR87_RS01850at 393.357 kb on + strand, within ABZR87_RS01850at 393.357 kb on + strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.358 kb on - strand, within ABZR87_RS01850at 393.408 kb on + strand, within ABZR87_RS01850at 393.409 kb on - strand, within ABZR87_RS01850at 393.409 kb on - strand, within ABZR87_RS01850at 393.480 kb on - strand, within ABZR87_RS01850at 393.480 kb on - strand, within ABZR87_RS01850at 393.480 kb on - strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.567 kb on + strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.568 kb on - strand, within ABZR87_RS01850at 393.722 kb on + strand, within ABZR87_RS01850at 393.722 kb on + strand, within ABZR87_RS01850at 393.723 kb on - strand, within ABZR87_RS01850at 393.723 kb on - strand, within ABZR87_RS01850at 393.795 kb on - strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.804 kb on + strand, within ABZR87_RS01850at 393.805 kb on - strand, within ABZR87_RS01850at 393.805 kb on - strand, within ABZR87_RS01850at 393.805 kb on - strand, within ABZR87_RS01850at 393.838 kb on + strand, within ABZR87_RS01850at 393.838 kb on + strand, within ABZR87_RS01850at 393.838 kb on + strand, within ABZR87_RS01850at 393.839 kb on - strand, within ABZR87_RS01850at 393.970 kb on - strand, within ABZR87_RS01850at 393.970 kb on - strand, within ABZR87_RS01850at 393.998 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.074 kb on + strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.075 kb on - strandat 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.259 kb on + strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.260 kb on - strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.304 kb on + strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.305 kb on - strand, within ABZR87_RS01855at 394.377 kb on + strand, within ABZR87_RS01855at 394.377 kb on + strand, within ABZR87_RS01855at 394.440 kb on - strand, within ABZR87_RS01855at 394.485 kb on + strand, within ABZR87_RS01855at 394.485 kb on + strand, within ABZR87_RS01855at 394.486 kb on - strand, within ABZR87_RS01855at 394.685 kb on + strand, within ABZR87_RS01855at 394.686 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.707 kb on - strand, within ABZR87_RS01855at 394.715 kb on + strand, within ABZR87_RS01855at 394.715 kb on + strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.716 kb on - strand, within ABZR87_RS01855at 394.749 kb on - strand, within ABZR87_RS01855at 394.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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392,101 + ABZR87_RS01845 0.60 -3.6
392,101 + ABZR87_RS01845 0.60 -0.9
392,101 + ABZR87_RS01845 0.60 -1.9
392,101 + ABZR87_RS01845 0.60 +0.5
392,102 - ABZR87_RS01845 0.60 -2.0
392,102 - ABZR87_RS01845 0.60 -1.2
392,102 - ABZR87_RS01845 0.60 -0.7
392,102 - ABZR87_RS01845 0.60 +1.0
392,304 + ABZR87_RS01845 0.71 -1.8
392,304 + ABZR87_RS01845 0.71 -0.1
392,305 - ABZR87_RS01845 0.71 -0.8
392,560 + ABZR87_RS01845 0.86 -0.5
392,560 + ABZR87_RS01845 0.86 -1.4
392,561 - ABZR87_RS01845 0.86 +0.4
392,561 - ABZR87_RS01845 0.86 -2.5
392,599 + ABZR87_RS01845 0.88 +1.3
392,599 + ABZR87_RS01845 0.88 -0.7
392,600 - ABZR87_RS01845 0.88 -1.0
392,600 - ABZR87_RS01845 0.88 -0.3
392,600 - ABZR87_RS01845 0.88 -2.1
392,620 + ABZR87_RS01845 0.90 -1.9
392,620 + ABZR87_RS01845 0.90 +1.1
392,620 + ABZR87_RS01845 0.90 -0.9
392,620 + ABZR87_RS01845 0.90 -0.5
392,620 + ABZR87_RS01845 0.90 -0.8
392,621 - ABZR87_RS01845 0.90 -1.3
392,621 - ABZR87_RS01845 0.90 +0.2
392,621 - ABZR87_RS01845 0.90 -0.6
392,621 - ABZR87_RS01845 0.90 -1.5
392,621 - ABZR87_RS01845 0.90 -3.5
392,621 - ABZR87_RS01845 0.90 -0.0
392,797 + -0.1
392,798 - -0.3
392,832 + -1.2
392,833 - +2.3
392,833 - -0.8
392,925 + +0.7
392,925 + +0.5
392,925 + +0.6
392,925 + -0.8
392,925 + -1.0
392,926 - -0.8
392,926 - -0.9
392,926 - -1.2
392,926 - -1.4
392,926 - -1.0
393,099 + ABZR87_RS01850 0.20 -1.3
393,099 + ABZR87_RS01850 0.20 +0.1
393,099 + ABZR87_RS01850 0.20 -3.2
393,099 + ABZR87_RS01850 0.20 +1.8
393,099 + ABZR87_RS01850 0.20 -1.2
393,099 + ABZR87_RS01850 0.20 +1.5
393,099 + ABZR87_RS01850 0.20 +0.7
393,099 + ABZR87_RS01850 0.20 -0.6
393,099 + ABZR87_RS01850 0.20 -0.0
393,100 - ABZR87_RS01850 0.20 -0.4
393,100 - ABZR87_RS01850 0.20 -2.2
393,273 + ABZR87_RS01850 0.34 +0.4
393,288 + ABZR87_RS01850 0.35 -0.0
393,288 + ABZR87_RS01850 0.35 -0.9
393,288 + ABZR87_RS01850 0.35 +0.8
393,288 + ABZR87_RS01850 0.35 -1.2
393,288 + ABZR87_RS01850 0.35 +0.3
393,289 - ABZR87_RS01850 0.35 -0.5
393,289 - ABZR87_RS01850 0.35 -1.3
393,289 - ABZR87_RS01850 0.35 -1.2
393,357 + ABZR87_RS01850 0.41 +0.4
393,357 + ABZR87_RS01850 0.41 +0.7
393,357 + ABZR87_RS01850 0.41 -0.7
393,358 - ABZR87_RS01850 0.41 -0.7
393,358 - ABZR87_RS01850 0.41 -1.0
393,358 - ABZR87_RS01850 0.41 +0.5
393,358 - ABZR87_RS01850 0.41 +0.8
393,408 + ABZR87_RS01850 0.45 +1.6
393,409 - ABZR87_RS01850 0.45 +0.7
393,409 - ABZR87_RS01850 0.45 -3.3
393,480 - ABZR87_RS01850 0.50 -1.7
393,480 - ABZR87_RS01850 0.50 -2.6
393,480 - ABZR87_RS01850 0.50 -0.6
393,567 + ABZR87_RS01850 0.57 +1.8
393,567 + ABZR87_RS01850 0.57 +0.2
393,567 + ABZR87_RS01850 0.57 +0.6
393,567 + ABZR87_RS01850 0.57 -0.5
393,567 + ABZR87_RS01850 0.57 -2.8
393,567 + ABZR87_RS01850 0.57 +1.5
393,567 + ABZR87_RS01850 0.57 -0.3
393,567 + ABZR87_RS01850 0.57 -1.2
393,568 - ABZR87_RS01850 0.57 -2.2
393,568 - ABZR87_RS01850 0.57 -0.5
393,568 - ABZR87_RS01850 0.57 +0.0
393,568 - ABZR87_RS01850 0.57 -2.9
393,568 - ABZR87_RS01850 0.57 -0.2
393,722 + ABZR87_RS01850 0.69 -0.4
393,722 + ABZR87_RS01850 0.69 +1.3
393,723 - ABZR87_RS01850 0.69 +0.3
393,723 - ABZR87_RS01850 0.69 -2.4
393,795 - ABZR87_RS01850 0.75 -1.5
393,804 + ABZR87_RS01850 0.76 -0.7
393,804 + ABZR87_RS01850 0.76 -1.0
393,804 + ABZR87_RS01850 0.76 -1.9
393,804 + ABZR87_RS01850 0.76 -1.4
393,805 - ABZR87_RS01850 0.76 -2.1
393,805 - ABZR87_RS01850 0.76 +1.3
393,805 - ABZR87_RS01850 0.76 -2.9
393,838 + ABZR87_RS01850 0.79 -0.7
393,838 + ABZR87_RS01850 0.79 -2.8
393,838 + ABZR87_RS01850 0.79 -0.4
393,839 - ABZR87_RS01850 0.79 -1.6
393,970 - ABZR87_RS01850 0.89 -0.5
393,970 - ABZR87_RS01850 0.89 -1.5
393,998 + -0.6
394,074 + +1.5
394,074 + +0.5
394,074 + +0.5
394,074 + +1.7
394,074 + +0.4
394,074 + +0.5
394,075 - -3.0
394,075 - +1.5
394,075 - -1.1
394,075 - +2.3
394,075 - -0.4
394,075 - -2.3
394,075 - +3.8
394,075 - +0.3
394,259 + ABZR87_RS01855 0.17 -0.7
394,259 + ABZR87_RS01855 0.17 +0.2
394,259 + ABZR87_RS01855 0.17 +1.8
394,259 + ABZR87_RS01855 0.17 -0.5
394,259 + ABZR87_RS01855 0.17 -0.2
394,260 - ABZR87_RS01855 0.17 +0.1
394,260 - ABZR87_RS01855 0.17 -2.0
394,260 - ABZR87_RS01855 0.17 +0.6
394,260 - ABZR87_RS01855 0.17 -1.7
394,304 + ABZR87_RS01855 0.22 -0.4
394,304 + ABZR87_RS01855 0.22 -3.0
394,304 + ABZR87_RS01855 0.22 +0.2
394,304 + ABZR87_RS01855 0.22 -2.6
394,304 + ABZR87_RS01855 0.22 -1.4
394,304 + ABZR87_RS01855 0.22 -1.1
394,304 + ABZR87_RS01855 0.22 -1.4
394,304 + ABZR87_RS01855 0.22 +0.0
394,304 + ABZR87_RS01855 0.22 -0.8
394,304 + ABZR87_RS01855 0.22 -0.2
394,304 + ABZR87_RS01855 0.22 -1.4
394,305 - ABZR87_RS01855 0.22 +0.0
394,305 - ABZR87_RS01855 0.22 +0.2
394,305 - ABZR87_RS01855 0.22 -0.1
394,305 - ABZR87_RS01855 0.22 +1.5
394,305 - ABZR87_RS01855 0.22 -2.0
394,305 - ABZR87_RS01855 0.22 +0.3
394,305 - ABZR87_RS01855 0.22 -2.4
394,377 + ABZR87_RS01855 0.30 +1.5
394,377 + ABZR87_RS01855 0.30 -1.8
394,440 - ABZR87_RS01855 0.38 -0.6
394,485 + ABZR87_RS01855 0.43 +0.3
394,485 + ABZR87_RS01855 0.43 -0.9
394,486 - ABZR87_RS01855 0.43 -1.2
394,685 + ABZR87_RS01855 0.65 +1.9
394,686 - ABZR87_RS01855 0.65 -0.1
394,707 - ABZR87_RS01855 0.68 -1.7
394,707 - ABZR87_RS01855 0.68 +0.2
394,707 - ABZR87_RS01855 0.68 -1.4
394,715 + ABZR87_RS01855 0.69 -2.0
394,715 + ABZR87_RS01855 0.69 +1.7
394,716 - ABZR87_RS01855 0.69 -2.0
394,716 - ABZR87_RS01855 0.69 -3.1
394,716 - ABZR87_RS01855 0.69 -1.5
394,749 - ABZR87_RS01855 0.73 +1.3
394,988 + -1.6

Or see this region's nucleotide sequence