Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01435

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01430 and ABZR87_RS01435 are separated by 314 nucleotidesABZR87_RS01435 and ABZR87_RS01440 are separated by 86 nucleotides ABZR87_RS01430: ABZR87_RS01430 - LysR family transcriptional regulator, at 299,832 to 300,875 _RS01430 ABZR87_RS01435: ABZR87_RS01435 - type I glyceraldehyde-3-phosphate dehydrogenase, at 301,190 to 302,188 _RS01435 ABZR87_RS01440: ABZR87_RS01440 - transketolase, at 302,275 to 304,290 _RS01440 Position (kb) 301 302 303Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 300.226 kb on + strand, within ABZR87_RS01430at 300.304 kb on + strand, within ABZR87_RS01430at 300.304 kb on + strand, within ABZR87_RS01430at 300.304 kb on + strand, within ABZR87_RS01430at 300.304 kb on + strand, within ABZR87_RS01430at 300.304 kb on + strand, within ABZR87_RS01430at 300.304 kb on + strand, within ABZR87_RS01430at 300.305 kb on - strand, within ABZR87_RS01430at 300.305 kb on - strand, within ABZR87_RS01430at 300.305 kb on - strand, within ABZR87_RS01430at 300.305 kb on - strand, within ABZR87_RS01430at 300.305 kb on - strand, within ABZR87_RS01430at 300.305 kb on - strand, within ABZR87_RS01430at 300.696 kb on - strand, within ABZR87_RS01430at 300.696 kb on - strand, within ABZR87_RS01430at 300.696 kb on - strand, within ABZR87_RS01430at 300.808 kb on + strandat 300.808 kb on + strandat 300.808 kb on + strandat 300.808 kb on + strandat 300.808 kb on + strandat 300.809 kb on - strandat 300.809 kb on - strandat 300.809 kb on - strandat 300.809 kb on - strandat 300.809 kb on - strandat 300.972 kb on + strandat 300.972 kb on + strandat 300.975 kb on + strandat 300.976 kb on - strandat 300.976 kb on - strandat 300.989 kb on - strandat 300.989 kb on - strandat 301.045 kb on + strandat 301.110 kb on + strandat 301.111 kb on - strandat 301.112 kb on - strandat 301.192 kb on - strandat 301.192 kb on - strandat 301.192 kb on - strandat 301.192 kb on - strandat 301.192 kb on - strandat 301.192 kb on - strandat 302.230 kb on - strandat 302.276 kb on + strandat 302.277 kb on - strandat 302.277 kb on - strandat 302.277 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
300,226 + ABZR87_RS01430 0.38 +1.0
300,304 + ABZR87_RS01430 0.45 +1.6
300,304 + ABZR87_RS01430 0.45 +2.3
300,304 + ABZR87_RS01430 0.45 +1.5
300,304 + ABZR87_RS01430 0.45 +1.3
300,304 + ABZR87_RS01430 0.45 +2.6
300,304 + ABZR87_RS01430 0.45 +1.1
300,305 - ABZR87_RS01430 0.45 +1.2
300,305 - ABZR87_RS01430 0.45 +1.2
300,305 - ABZR87_RS01430 0.45 +1.5
300,305 - ABZR87_RS01430 0.45 +1.3
300,305 - ABZR87_RS01430 0.45 -4.3
300,305 - ABZR87_RS01430 0.45 +1.6
300,696 - ABZR87_RS01430 0.83 +1.6
300,696 - ABZR87_RS01430 0.83 -1.3
300,696 - ABZR87_RS01430 0.83 +2.5
300,808 + +0.4
300,808 + +1.8
300,808 + +2.6
300,808 + +0.2
300,808 + +1.7
300,809 - -2.2
300,809 - +1.6
300,809 - +2.3
300,809 - +1.3
300,809 - +0.8
300,972 + +1.8
300,972 + +2.3
300,975 + +3.3
300,976 - +1.0
300,976 - +1.3
300,989 - -2.1
300,989 - +0.5
301,045 + +1.4
301,110 + +2.5
301,111 - +0.1
301,112 - -0.1
301,192 - -2.2
301,192 - -1.5
301,192 - +0.8
301,192 - -0.7
301,192 - -2.1
301,192 - +1.4
302,230 - +2.0
302,276 + +2.8
302,277 - +0.5
302,277 - -0.7
302,277 - +0.7

Or see this region's nucleotide sequence