Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01300

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01295 and ABZR87_RS01300 are separated by 99 nucleotidesABZR87_RS01300 and ABZR87_RS01305 are separated by 63 nucleotidesABZR87_RS01305 and ABZR87_RS01310 are separated by 99 nucleotides ABZR87_RS01295: ABZR87_RS01295 - protein translocase subunit SecF, at 270,485 to 271,456 _RS01295 ABZR87_RS01300: ABZR87_RS01300 - YceI family protein, at 271,556 to 272,152 _RS01300 ABZR87_RS01305: ABZR87_RS01305 - YceI family protein, at 272,216 to 272,788 _RS01305 ABZR87_RS01310: ABZR87_RS01310 - cytochrome b, at 272,888 to 273,469 _RS01310 Position (kb) 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 271.534 kb on + strandat 271.557 kb on + strandat 271.557 kb on + strandat 271.558 kb on - strandat 271.632 kb on + strand, within ABZR87_RS01300at 271.632 kb on + strand, within ABZR87_RS01300at 271.632 kb on + strand, within ABZR87_RS01300at 271.633 kb on - strand, within ABZR87_RS01300at 271.633 kb on - strand, within ABZR87_RS01300at 271.645 kb on - strand, within ABZR87_RS01300at 271.854 kb on + strand, within ABZR87_RS01300at 271.854 kb on + strand, within ABZR87_RS01300at 271.855 kb on - strand, within ABZR87_RS01300at 271.855 kb on - strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.059 kb on + strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.060 kb on - strand, within ABZR87_RS01300at 272.080 kb on - strand, within ABZR87_RS01300at 272.080 kb on - strand, within ABZR87_RS01300at 272.080 kb on - strand, within ABZR87_RS01300at 272.083 kb on + strand, within ABZR87_RS01300at 272.084 kb on - strand, within ABZR87_RS01300at 272.108 kb on - strandat 272.141 kb on - strandat 272.217 kb on + strandat 272.275 kb on + strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.276 kb on - strand, within ABZR87_RS01305at 272.526 kb on + strand, within ABZR87_RS01305at 272.526 kb on + strand, within ABZR87_RS01305at 272.526 kb on + strand, within ABZR87_RS01305at 272.527 kb on - strand, within ABZR87_RS01305at 272.604 kb on + strand, within ABZR87_RS01305at 272.604 kb on + strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.605 kb on - strand, within ABZR87_RS01305at 272.721 kb on - strand, within ABZR87_RS01305at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.078 kb on + strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.079 kb on - strand, within ABZR87_RS01310at 273.114 kb on + strand, within ABZR87_RS01310at 273.114 kb on + strand, within ABZR87_RS01310at 273.147 kb on + strand, within ABZR87_RS01310at 273.147 kb on + strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310at 273.148 kb on - strand, within ABZR87_RS01310

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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271,534 + -0.7
271,557 + -1.6
271,557 + +1.6
271,558 - +3.9
271,632 + ABZR87_RS01300 0.13 +1.3
271,632 + ABZR87_RS01300 0.13 -2.0
271,632 + ABZR87_RS01300 0.13 +1.3
271,633 - ABZR87_RS01300 0.13 +0.6
271,633 - ABZR87_RS01300 0.13 +2.0
271,645 - ABZR87_RS01300 0.15 -1.1
271,854 + ABZR87_RS01300 0.50 +0.0
271,854 + ABZR87_RS01300 0.50 -0.0
271,855 - ABZR87_RS01300 0.50 +2.9
271,855 - ABZR87_RS01300 0.50 +0.1
272,059 + ABZR87_RS01300 0.84 -0.3
272,059 + ABZR87_RS01300 0.84 -2.1
272,059 + ABZR87_RS01300 0.84 -0.4
272,059 + ABZR87_RS01300 0.84 +1.1
272,059 + ABZR87_RS01300 0.84 +0.2
272,059 + ABZR87_RS01300 0.84 +0.8
272,059 + ABZR87_RS01300 0.84 +2.6
272,059 + ABZR87_RS01300 0.84 -0.3
272,059 + ABZR87_RS01300 0.84 +0.5
272,060 - ABZR87_RS01300 0.84 +1.6
272,060 - ABZR87_RS01300 0.84 -0.2
272,060 - ABZR87_RS01300 0.84 +1.5
272,060 - ABZR87_RS01300 0.84 +0.4
272,060 - ABZR87_RS01300 0.84 +0.2
272,060 - ABZR87_RS01300 0.84 -2.5
272,060 - ABZR87_RS01300 0.84 -1.6
272,060 - ABZR87_RS01300 0.84 +1.2
272,080 - ABZR87_RS01300 0.88 -2.9
272,080 - ABZR87_RS01300 0.88 +1.6
272,080 - ABZR87_RS01300 0.88 +0.8
272,083 + ABZR87_RS01300 0.88 -1.5
272,084 - ABZR87_RS01300 0.88 +0.0
272,108 - -1.2
272,141 - -0.4
272,217 + -0.4
272,275 + ABZR87_RS01305 0.10 -0.2
272,276 - ABZR87_RS01305 0.10 -0.9
272,276 - ABZR87_RS01305 0.10 +0.5
272,276 - ABZR87_RS01305 0.10 -3.9
272,276 - ABZR87_RS01305 0.10 +0.9
272,276 - ABZR87_RS01305 0.10 +0.9
272,526 + ABZR87_RS01305 0.54 -0.7
272,526 + ABZR87_RS01305 0.54 +0.1
272,526 + ABZR87_RS01305 0.54 -0.7
272,527 - ABZR87_RS01305 0.54 +0.6
272,604 + ABZR87_RS01305 0.68 -2.5
272,604 + ABZR87_RS01305 0.68 -0.7
272,605 - ABZR87_RS01305 0.68 -2.2
272,605 - ABZR87_RS01305 0.68 +0.1
272,605 - ABZR87_RS01305 0.68 -0.8
272,605 - ABZR87_RS01305 0.68 -2.1
272,721 - ABZR87_RS01305 0.88 +1.0
273,078 + ABZR87_RS01310 0.33 -0.3
273,078 + ABZR87_RS01310 0.33 +0.7
273,078 + ABZR87_RS01310 0.33 -1.3
273,078 + ABZR87_RS01310 0.33 +2.7
273,079 - ABZR87_RS01310 0.33 +0.7
273,079 - ABZR87_RS01310 0.33 -1.5
273,079 - ABZR87_RS01310 0.33 +0.3
273,079 - ABZR87_RS01310 0.33 -0.4
273,079 - ABZR87_RS01310 0.33 +1.2
273,114 + ABZR87_RS01310 0.39 -1.7
273,114 + ABZR87_RS01310 0.39 +0.5
273,147 + ABZR87_RS01310 0.45 -1.4
273,147 + ABZR87_RS01310 0.45 +0.9
273,148 - ABZR87_RS01310 0.45 -0.2
273,148 - ABZR87_RS01310 0.45 +1.9
273,148 - ABZR87_RS01310 0.45 -0.4
273,148 - ABZR87_RS01310 0.45 -0.0
273,148 - ABZR87_RS01310 0.45 +1.1
273,148 - ABZR87_RS01310 0.45 +1.0

Or see this region's nucleotide sequence