Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00685 and ABZR87_RS00690 are separated by 254 nucleotides ABZR87_RS00690 and ABZR87_RS00695 are separated by 146 nucleotides ABZR87_RS00695 and ABZR87_RS00700 are separated by 3 nucleotides ABZR87_RS00700 and ABZR87_RS00705 are separated by 52 nucleotides
ABZR87_RS00685: ABZR87_RS00685 - hypothetical protein, at 139,604 to 140,116
_RS00685
ABZR87_RS00690: ABZR87_RS00690 - ester cyclase, at 140,371 to 140,916
_RS00690
ABZR87_RS00695: ABZR87_RS00695 - DUF2167 domain-containing protein, at 141,063 to 141,992
_RS00695
ABZR87_RS00700: ABZR87_RS00700 - site-2 protease family protein, at 141,996 to 142,715
_RS00700
ABZR87_RS00705: ABZR87_RS00705 - superoxide dismutase [Fe], at 142,768 to 143,346
_RS00705
Position (kb) 141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 140.101 kb on + strand at 140.102 kb on - strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.135 kb on + strand at 140.136 kb on - strand at 140.136 kb on - strand at 140.136 kb on - strand at 140.163 kb on + strand at 140.220 kb on + strand at 140.221 kb on - strand at 140.221 kb on - strand at 140.333 kb on + strand at 140.333 kb on + strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.334 kb on - strand at 140.542 kb on + strand, within ABZR87_RS00690 at 140.560 kb on - strand, within ABZR87_RS00690 at 140.576 kb on - strand, within ABZR87_RS00690 at 140.831 kb on - strand, within ABZR87_RS00690 at 140.915 kb on - strand at 140.933 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 140.968 kb on - strand at 141.417 kb on + strand, within ABZR87_RS00695 at 141.417 kb on + strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.418 kb on - strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.432 kb on + strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.433 kb on - strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.477 kb on + strand, within ABZR87_RS00695 at 141.478 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.577 kb on - strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.660 kb on + strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.661 kb on - strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.669 kb on + strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.670 kb on - strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.690 kb on + strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.691 kb on - strand, within ABZR87_RS00695 at 141.792 kb on + strand, within ABZR87_RS00695 at 141.793 kb on - strand, within ABZR87_RS00695 at 141.831 kb on + strand, within ABZR87_RS00695 at 141.990 kb on + strand at 141.991 kb on - strand at 141.991 kb on - strand at 141.991 kb on - strand at 142.086 kb on + strand, within ABZR87_RS00700 at 142.086 kb on + strand, within ABZR87_RS00700 at 142.086 kb on + strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.087 kb on - strand, within ABZR87_RS00700 at 142.110 kb on + strand, within ABZR87_RS00700 at 142.111 kb on - strand, within ABZR87_RS00700 at 142.117 kb on + strand, within ABZR87_RS00700 at 142.433 kb on + strand, within ABZR87_RS00700 at 142.596 kb on + strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.597 kb on - strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.599 kb on + strand, within ABZR87_RS00700 at 142.600 kb on - strand, within ABZR87_RS00700 at 142.600 kb on - strand, within ABZR87_RS00700 at 142.600 kb on - strand, within ABZR87_RS00700 at 142.629 kb on + strand, within ABZR87_RS00700 at 142.629 kb on + strand, within ABZR87_RS00700 at 142.630 kb on - strand, within ABZR87_RS00700 at 142.630 kb on - strand, within ABZR87_RS00700 at 142.630 kb on - strand, within ABZR87_RS00700 at 142.638 kb on + strand, within ABZR87_RS00700 at 142.638 kb on + strand, within ABZR87_RS00700 at 142.638 kb on + strand, within ABZR87_RS00700 at 142.639 kb on - strand, within ABZR87_RS00700 at 142.639 kb on - strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.641 kb on + strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700 at 142.642 kb on - strand, within ABZR87_RS00700
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 140,101 + -0.1 140,102 - -0.8 140,135 + +0.6 140,135 + -1.3 140,135 + +1.3 140,135 + -2.2 140,135 + -2.6 140,136 - +0.8 140,136 - +0.9 140,136 - +0.6 140,163 + -1.0 140,220 + +0.2 140,221 - +1.0 140,221 - -1.8 140,333 + +1.3 140,333 + -1.9 140,334 - -1.0 140,334 - +1.7 140,334 - +0.3 140,334 - +0.0 140,542 + ABZR87_RS00690 0.31 +1.2 140,560 - ABZR87_RS00690 0.35 -0.1 140,576 - ABZR87_RS00690 0.38 -0.7 140,831 - ABZR87_RS00690 0.84 +0.4 140,915 - +2.3 140,933 - +1.0 140,968 - +0.9 140,968 - +1.7 140,968 - +0.4 140,968 - +1.8 141,417 + ABZR87_RS00695 0.38 -1.7 141,417 + ABZR87_RS00695 0.38 +0.3 141,418 - ABZR87_RS00695 0.38 -0.3 141,418 - ABZR87_RS00695 0.38 -3.1 141,418 - ABZR87_RS00695 0.38 +0.4 141,432 + ABZR87_RS00695 0.40 +2.2 141,432 + ABZR87_RS00695 0.40 +0.1 141,433 - ABZR87_RS00695 0.40 +0.2 141,433 - ABZR87_RS00695 0.40 +1.0 141,477 + ABZR87_RS00695 0.45 -1.2 141,477 + ABZR87_RS00695 0.45 +0.9 141,477 + ABZR87_RS00695 0.45 -0.7 141,478 - ABZR87_RS00695 0.45 -3.6 141,577 - ABZR87_RS00695 0.55 -1.1 141,577 - ABZR87_RS00695 0.55 -0.2 141,660 + ABZR87_RS00695 0.64 +1.2 141,660 + ABZR87_RS00695 0.64 -1.1 141,660 + ABZR87_RS00695 0.64 +1.7 141,661 - ABZR87_RS00695 0.64 +0.6 141,661 - ABZR87_RS00695 0.64 -0.7 141,661 - ABZR87_RS00695 0.64 -0.4 141,669 + ABZR87_RS00695 0.65 +1.1 141,669 + ABZR87_RS00695 0.65 -2.5 141,669 + ABZR87_RS00695 0.65 +1.3 141,669 + ABZR87_RS00695 0.65 +0.2 141,669 + ABZR87_RS00695 0.65 -3.3 141,669 + ABZR87_RS00695 0.65 -0.7 141,669 + ABZR87_RS00695 0.65 +1.7 141,669 + ABZR87_RS00695 0.65 +1.0 141,669 + ABZR87_RS00695 0.65 -0.8 141,669 + ABZR87_RS00695 0.65 -2.4 141,669 + ABZR87_RS00695 0.65 -0.9 141,669 + ABZR87_RS00695 0.65 -1.3 141,669 + ABZR87_RS00695 0.65 +0.5 141,669 + ABZR87_RS00695 0.65 -1.8 141,669 + ABZR87_RS00695 0.65 +1.5 141,670 - ABZR87_RS00695 0.65 -3.1 141,670 - ABZR87_RS00695 0.65 -0.7 141,670 - ABZR87_RS00695 0.65 -0.6 141,670 - ABZR87_RS00695 0.65 +1.2 141,670 - ABZR87_RS00695 0.65 -0.4 141,670 - ABZR87_RS00695 0.65 +1.6 141,670 - ABZR87_RS00695 0.65 -3.0 141,670 - ABZR87_RS00695 0.65 -1.7 141,670 - ABZR87_RS00695 0.65 +0.5 141,670 - ABZR87_RS00695 0.65 -3.2 141,670 - ABZR87_RS00695 0.65 +0.7 141,670 - ABZR87_RS00695 0.65 -3.6 141,670 - ABZR87_RS00695 0.65 +1.2 141,670 - ABZR87_RS00695 0.65 -2.1 141,670 - ABZR87_RS00695 0.65 +2.5 141,670 - ABZR87_RS00695 0.65 -0.5 141,670 - ABZR87_RS00695 0.65 -2.6 141,670 - ABZR87_RS00695 0.65 +0.4 141,670 - ABZR87_RS00695 0.65 -1.7 141,670 - ABZR87_RS00695 0.65 -2.9 141,690 + ABZR87_RS00695 0.67 -0.1 141,690 + ABZR87_RS00695 0.67 +0.3 141,690 + ABZR87_RS00695 0.67 +1.6 141,690 + ABZR87_RS00695 0.67 -1.4 141,691 - ABZR87_RS00695 0.68 +1.5 141,691 - ABZR87_RS00695 0.68 +0.4 141,792 + ABZR87_RS00695 0.78 -1.0 141,793 - ABZR87_RS00695 0.78 +0.9 141,831 + ABZR87_RS00695 0.83 +1.0 141,990 + -2.6 141,991 - -2.1 141,991 - -1.0 141,991 - +0.8 142,086 + ABZR87_RS00700 0.12 -0.0 142,086 + ABZR87_RS00700 0.12 +1.4 142,086 + ABZR87_RS00700 0.12 +0.7 142,087 - ABZR87_RS00700 0.13 +2.4 142,087 - ABZR87_RS00700 0.13 -1.3 142,087 - ABZR87_RS00700 0.13 -1.1 142,087 - ABZR87_RS00700 0.13 -0.4 142,110 + ABZR87_RS00700 0.16 -1.0 142,111 - ABZR87_RS00700 0.16 +0.6 142,117 + ABZR87_RS00700 0.17 +1.6 142,433 + ABZR87_RS00700 0.61 +1.3 142,596 + ABZR87_RS00700 0.83 -1.4 142,597 - ABZR87_RS00700 0.83 +0.9 142,597 - ABZR87_RS00700 0.83 -2.1 142,597 - ABZR87_RS00700 0.83 +2.8 142,597 - ABZR87_RS00700 0.83 +1.9 142,599 + ABZR87_RS00700 0.84 -0.0 142,599 + ABZR87_RS00700 0.84 +0.5 142,599 + ABZR87_RS00700 0.84 +1.2 142,599 + ABZR87_RS00700 0.84 +0.2 142,599 + ABZR87_RS00700 0.84 +0.4 142,599 + ABZR87_RS00700 0.84 +1.6 142,599 + ABZR87_RS00700 0.84 -2.2 142,599 + ABZR87_RS00700 0.84 +0.1 142,599 + ABZR87_RS00700 0.84 +1.6 142,599 + ABZR87_RS00700 0.84 +0.2 142,600 - ABZR87_RS00700 0.84 +0.4 142,600 - ABZR87_RS00700 0.84 +1.0 142,600 - ABZR87_RS00700 0.84 +1.1 142,629 + ABZR87_RS00700 0.88 +1.3 142,629 + ABZR87_RS00700 0.88 -0.3 142,630 - ABZR87_RS00700 0.88 +0.5 142,630 - ABZR87_RS00700 0.88 -1.3 142,630 - ABZR87_RS00700 0.88 +1.0 142,638 + ABZR87_RS00700 0.89 -0.6 142,638 + ABZR87_RS00700 0.89 -1.1 142,638 + ABZR87_RS00700 0.89 +0.9 142,639 - ABZR87_RS00700 0.89 -0.5 142,639 - ABZR87_RS00700 0.89 -0.8 142,641 + ABZR87_RS00700 0.90 -1.7 142,641 + ABZR87_RS00700 0.90 -0.5 142,641 + ABZR87_RS00700 0.90 +1.3 142,641 + ABZR87_RS00700 0.90 +1.8 142,641 + ABZR87_RS00700 0.90 -0.2 142,641 + ABZR87_RS00700 0.90 -1.1 142,641 + ABZR87_RS00700 0.90 -1.9 142,642 - ABZR87_RS00700 0.90 +0.9 142,642 - ABZR87_RS00700 0.90 -0.7 142,642 - ABZR87_RS00700 0.90 -2.3 142,642 - ABZR87_RS00700 0.90 +1.8 142,642 - ABZR87_RS00700 0.90 -1.9
Or see this region's nucleotide sequence