Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3637

Experiment: nitrite 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3635 and Shewana3_3636 are separated by 145 nucleotidesShewana3_3636 and Shewana3_3637 are separated by 168 nucleotidesShewana3_3637 and Shewana3_3638 are separated by 1 nucleotides Shewana3_3635: Shewana3_3635 - hypothetical protein (RefSeq), at 4,366,444 to 4,366,983 _3635 Shewana3_3636: Shewana3_3636 - hypothetical protein (RefSeq), at 4,367,129 to 4,367,530 _3636 Shewana3_3637: Shewana3_3637 - hypothetical protein (RefSeq), at 4,367,699 to 4,368,850 _3637 Shewana3_3638: Shewana3_3638 - ABC-2 type transporter (RefSeq), at 4,368,852 to 4,370,147 _3638 Position (kb) 4367 4368 4369Strain fitness (log2 ratio) -2 -1 0 1 2at 4366.726 kb on - strand, within Shewana3_3635at 4366.765 kb on - strand, within Shewana3_3635at 4366.914 kb on - strand, within Shewana3_3635at 4366.914 kb on - strand, within Shewana3_3635at 4366.961 kb on - strandat 4366.964 kb on + strandat 4367.254 kb on - strand, within Shewana3_3636at 4367.270 kb on - strand, within Shewana3_3636at 4367.272 kb on + strand, within Shewana3_3636at 4367.283 kb on + strand, within Shewana3_3636at 4367.464 kb on + strand, within Shewana3_3636at 4367.789 kb on - strandat 4367.817 kb on - strand, within Shewana3_3637at 4367.958 kb on - strand, within Shewana3_3637at 4368.018 kb on - strand, within Shewana3_3637at 4368.186 kb on + strand, within Shewana3_3637at 4368.281 kb on - strand, within Shewana3_3637at 4368.294 kb on + strand, within Shewana3_3637at 4368.321 kb on - strand, within Shewana3_3637at 4368.499 kb on + strand, within Shewana3_3637at 4368.752 kb on - strandat 4368.797 kb on - strandat 4368.876 kb on - strandat 4369.206 kb on - strand, within Shewana3_3638at 4369.259 kb on + strand, within Shewana3_3638at 4369.267 kb on - strand, within Shewana3_3638at 4369.423 kb on + strand, within Shewana3_3638at 4369.423 kb on + strand, within Shewana3_3638at 4369.464 kb on - strand, within Shewana3_3638at 4369.487 kb on - strand, within Shewana3_3638at 4369.534 kb on + strand, within Shewana3_3638at 4369.624 kb on - strand, within Shewana3_3638at 4369.780 kb on + strand, within Shewana3_3638at 4369.788 kb on - strand, within Shewana3_3638at 4369.788 kb on - strand, within Shewana3_3638at 4369.788 kb on - strand, within Shewana3_3638at 4369.793 kb on - strand, within Shewana3_3638at 4369.813 kb on + strand, within Shewana3_3638

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
remove
4,366,726 - Shewana3_3635 0.52 +0.1
4,366,765 - Shewana3_3635 0.59 -2.2
4,366,914 - Shewana3_3635 0.87 -0.9
4,366,914 - Shewana3_3635 0.87 -0.3
4,366,961 - -2.5
4,366,964 + -0.6
4,367,254 - Shewana3_3636 0.31 -1.1
4,367,270 - Shewana3_3636 0.35 -0.6
4,367,272 + Shewana3_3636 0.36 +0.0
4,367,283 + Shewana3_3636 0.38 -0.4
4,367,464 + Shewana3_3636 0.83 +0.2
4,367,789 - -0.1
4,367,817 - Shewana3_3637 0.10 +0.1
4,367,958 - Shewana3_3637 0.22 -0.4
4,368,018 - Shewana3_3637 0.28 +0.5
4,368,186 + Shewana3_3637 0.42 -0.8
4,368,281 - Shewana3_3637 0.51 +1.8
4,368,294 + Shewana3_3637 0.52 +1.5
4,368,321 - Shewana3_3637 0.54 +0.4
4,368,499 + Shewana3_3637 0.69 -0.8
4,368,752 - +0.3
4,368,797 - +0.4
4,368,876 - +0.9
4,369,206 - Shewana3_3638 0.27 +0.5
4,369,259 + Shewana3_3638 0.31 +0.4
4,369,267 - Shewana3_3638 0.32 +0.0
4,369,423 + Shewana3_3638 0.44 +0.4
4,369,423 + Shewana3_3638 0.44 -0.2
4,369,464 - Shewana3_3638 0.47 +0.3
4,369,487 - Shewana3_3638 0.49 +0.3
4,369,534 + Shewana3_3638 0.53 -0.1
4,369,624 - Shewana3_3638 0.60 -0.3
4,369,780 + Shewana3_3638 0.72 +0.0
4,369,788 - Shewana3_3638 0.72 +0.4
4,369,788 - Shewana3_3638 0.72 +0.4
4,369,788 - Shewana3_3638 0.72 -0.2
4,369,793 - Shewana3_3638 0.73 -0.5
4,369,813 + Shewana3_3638 0.74 -0.6

Or see this region's nucleotide sequence