Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3339 and Shewana3_3340 are separated by 133 nucleotides Shewana3_3340 and Shewana3_3341 overlap by 17 nucleotides
Shewana3_3339: Shewana3_3339 - radical SAM domain-containing protein (RefSeq), at 4,007,172 to 4,007,891
_3339
Shewana3_3340: Shewana3_3340 - putative PAS/PAC sensor protein (RefSeq), at 4,008,025 to 4,010,259
_3340
Shewana3_3341: Shewana3_3341 - hypothetical protein (RefSeq), at 4,010,243 to 4,011,640
_3341
Position (kb)
4008
4009
4010
4011 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4007.056 kb on + strand at 4007.061 kb on + strand at 4007.069 kb on - strand at 4007.074 kb on - strand at 4007.233 kb on - strand at 4007.235 kb on + strand at 4007.265 kb on + strand, within Shewana3_3339 at 4007.363 kb on - strand, within Shewana3_3339 at 4007.363 kb on - strand, within Shewana3_3339 at 4007.445 kb on - strand, within Shewana3_3339 at 4007.477 kb on - strand, within Shewana3_3339 at 4007.492 kb on + strand, within Shewana3_3339 at 4007.660 kb on - strand, within Shewana3_3339 at 4007.686 kb on - strand, within Shewana3_3339 at 4007.786 kb on - strand, within Shewana3_3339 at 4007.808 kb on - strand, within Shewana3_3339 at 4008.076 kb on + strand at 4008.220 kb on - strand at 4008.244 kb on - strand at 4008.257 kb on - strand, within Shewana3_3340 at 4008.274 kb on - strand, within Shewana3_3340 at 4008.389 kb on + strand, within Shewana3_3340 at 4008.726 kb on - strand, within Shewana3_3340 at 4008.728 kb on + strand, within Shewana3_3340 at 4009.045 kb on - strand, within Shewana3_3340 at 4009.066 kb on + strand, within Shewana3_3340 at 4009.084 kb on - strand, within Shewana3_3340 at 4009.123 kb on - strand, within Shewana3_3340 at 4009.135 kb on - strand, within Shewana3_3340 at 4009.157 kb on + strand, within Shewana3_3340 at 4009.327 kb on - strand, within Shewana3_3340 at 4009.327 kb on - strand, within Shewana3_3340 at 4009.327 kb on - strand, within Shewana3_3340 at 4009.691 kb on + strand, within Shewana3_3340 at 4009.787 kb on + strand, within Shewana3_3340 at 4009.996 kb on - strand, within Shewana3_3340 at 4010.097 kb on + strand at 4010.192 kb on - strand at 4010.326 kb on - strand at 4010.361 kb on - strand at 4010.461 kb on + strand, within Shewana3_3341 at 4010.938 kb on - strand, within Shewana3_3341 at 4010.945 kb on - strand, within Shewana3_3341 at 4011.084 kb on + strand, within Shewana3_3341 at 4011.084 kb on + strand, within Shewana3_3341
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 4,007,056 + -2.2 4,007,061 + +0.2 4,007,069 - -0.3 4,007,074 - +0.3 4,007,233 - -1.3 4,007,235 + -0.2 4,007,265 + Shewana3_3339 0.13 +0.4 4,007,363 - Shewana3_3339 0.27 +0.5 4,007,363 - Shewana3_3339 0.27 +1.0 4,007,445 - Shewana3_3339 0.38 -0.4 4,007,477 - Shewana3_3339 0.42 -0.2 4,007,492 + Shewana3_3339 0.44 -0.1 4,007,660 - Shewana3_3339 0.68 +0.6 4,007,686 - Shewana3_3339 0.71 -0.3 4,007,786 - Shewana3_3339 0.85 -1.2 4,007,808 - Shewana3_3339 0.88 -0.2 4,008,076 + -1.1 4,008,220 - -0.2 4,008,244 - -1.4 4,008,257 - Shewana3_3340 0.10 -1.7 4,008,274 - Shewana3_3340 0.11 -1.1 4,008,389 + Shewana3_3340 0.16 -1.5 4,008,726 - Shewana3_3340 0.31 -1.6 4,008,728 + Shewana3_3340 0.31 -1.0 4,009,045 - Shewana3_3340 0.46 -0.8 4,009,066 + Shewana3_3340 0.47 -1.6 4,009,084 - Shewana3_3340 0.47 -1.5 4,009,123 - Shewana3_3340 0.49 -1.0 4,009,135 - Shewana3_3340 0.50 -1.1 4,009,157 + Shewana3_3340 0.51 -0.7 4,009,327 - Shewana3_3340 0.58 -0.5 4,009,327 - Shewana3_3340 0.58 -0.6 4,009,327 - Shewana3_3340 0.58 -1.1 4,009,691 + Shewana3_3340 0.75 -3.7 4,009,787 + Shewana3_3340 0.79 -0.9 4,009,996 - Shewana3_3340 0.88 -0.7 4,010,097 + -0.8 4,010,192 - -1.0 4,010,326 - -0.0 4,010,361 - -0.0 4,010,461 + Shewana3_3341 0.16 +0.8 4,010,938 - Shewana3_3341 0.50 +0.5 4,010,945 - Shewana3_3341 0.50 +0.3 4,011,084 + Shewana3_3341 0.60 +0.9 4,011,084 + Shewana3_3341 0.60 -0.9
Or see this region's nucleotide sequence