Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3340

Experiment: nitrite 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3339 and Shewana3_3340 are separated by 133 nucleotidesShewana3_3340 and Shewana3_3341 overlap by 17 nucleotides Shewana3_3339: Shewana3_3339 - radical SAM domain-containing protein (RefSeq), at 4,007,172 to 4,007,891 _3339 Shewana3_3340: Shewana3_3340 - putative PAS/PAC sensor protein (RefSeq), at 4,008,025 to 4,010,259 _3340 Shewana3_3341: Shewana3_3341 - hypothetical protein (RefSeq), at 4,010,243 to 4,011,640 _3341 Position (kb) 4008 4009 4010 4011Strain fitness (log2 ratio) -3 -2 -1 0 1at 4007.056 kb on + strandat 4007.061 kb on + strandat 4007.069 kb on - strandat 4007.074 kb on - strandat 4007.233 kb on - strandat 4007.235 kb on + strandat 4007.265 kb on + strand, within Shewana3_3339at 4007.363 kb on - strand, within Shewana3_3339at 4007.363 kb on - strand, within Shewana3_3339at 4007.445 kb on - strand, within Shewana3_3339at 4007.477 kb on - strand, within Shewana3_3339at 4007.492 kb on + strand, within Shewana3_3339at 4007.660 kb on - strand, within Shewana3_3339at 4007.686 kb on - strand, within Shewana3_3339at 4007.786 kb on - strand, within Shewana3_3339at 4007.808 kb on - strand, within Shewana3_3339at 4008.076 kb on + strandat 4008.220 kb on - strandat 4008.244 kb on - strandat 4008.257 kb on - strand, within Shewana3_3340at 4008.274 kb on - strand, within Shewana3_3340at 4008.389 kb on + strand, within Shewana3_3340at 4008.726 kb on - strand, within Shewana3_3340at 4008.728 kb on + strand, within Shewana3_3340at 4009.045 kb on - strand, within Shewana3_3340at 4009.066 kb on + strand, within Shewana3_3340at 4009.084 kb on - strand, within Shewana3_3340at 4009.123 kb on - strand, within Shewana3_3340at 4009.135 kb on - strand, within Shewana3_3340at 4009.157 kb on + strand, within Shewana3_3340at 4009.327 kb on - strand, within Shewana3_3340at 4009.327 kb on - strand, within Shewana3_3340at 4009.327 kb on - strand, within Shewana3_3340at 4009.691 kb on + strand, within Shewana3_3340at 4009.787 kb on + strand, within Shewana3_3340at 4009.996 kb on - strand, within Shewana3_3340at 4010.097 kb on + strandat 4010.192 kb on - strandat 4010.326 kb on - strandat 4010.361 kb on - strandat 4010.461 kb on + strand, within Shewana3_3341at 4010.938 kb on - strand, within Shewana3_3341at 4010.945 kb on - strand, within Shewana3_3341at 4011.084 kb on + strand, within Shewana3_3341at 4011.084 kb on + strand, within Shewana3_3341

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
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4,007,056 + -2.2
4,007,061 + +0.2
4,007,069 - -0.3
4,007,074 - +0.3
4,007,233 - -1.3
4,007,235 + -0.2
4,007,265 + Shewana3_3339 0.13 +0.4
4,007,363 - Shewana3_3339 0.27 +0.5
4,007,363 - Shewana3_3339 0.27 +1.0
4,007,445 - Shewana3_3339 0.38 -0.4
4,007,477 - Shewana3_3339 0.42 -0.2
4,007,492 + Shewana3_3339 0.44 -0.1
4,007,660 - Shewana3_3339 0.68 +0.6
4,007,686 - Shewana3_3339 0.71 -0.3
4,007,786 - Shewana3_3339 0.85 -1.2
4,007,808 - Shewana3_3339 0.88 -0.2
4,008,076 + -1.1
4,008,220 - -0.2
4,008,244 - -1.4
4,008,257 - Shewana3_3340 0.10 -1.7
4,008,274 - Shewana3_3340 0.11 -1.1
4,008,389 + Shewana3_3340 0.16 -1.5
4,008,726 - Shewana3_3340 0.31 -1.6
4,008,728 + Shewana3_3340 0.31 -1.0
4,009,045 - Shewana3_3340 0.46 -0.8
4,009,066 + Shewana3_3340 0.47 -1.6
4,009,084 - Shewana3_3340 0.47 -1.5
4,009,123 - Shewana3_3340 0.49 -1.0
4,009,135 - Shewana3_3340 0.50 -1.1
4,009,157 + Shewana3_3340 0.51 -0.7
4,009,327 - Shewana3_3340 0.58 -0.5
4,009,327 - Shewana3_3340 0.58 -0.6
4,009,327 - Shewana3_3340 0.58 -1.1
4,009,691 + Shewana3_3340 0.75 -3.7
4,009,787 + Shewana3_3340 0.79 -0.9
4,009,996 - Shewana3_3340 0.88 -0.7
4,010,097 + -0.8
4,010,192 - -1.0
4,010,326 - -0.0
4,010,361 - -0.0
4,010,461 + Shewana3_3341 0.16 +0.8
4,010,938 - Shewana3_3341 0.50 +0.5
4,010,945 - Shewana3_3341 0.50 +0.3
4,011,084 + Shewana3_3341 0.60 +0.9
4,011,084 + Shewana3_3341 0.60 -0.9

Or see this region's nucleotide sequence