Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2909

Experiment: nitrite 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 15 mM
3,481,349	+				-0.3
3,481,349	+				-0.5
3,481,374	-		Shewana3_2908	0.13	+0.1
3,481,385	+		Shewana3_2908	0.15	+0.3
3,481,541	+		Shewana3_2908	0.42	-0.4
3,481,973	-				+0.7
3,481,984	+				+0.6
3,481,993	+				-0.5
3,481,999	-				+0.0
3,482,145	+				-0.2
3,482,154	+				-0.2
3,482,173	-				-1.2
3,482,198	-				+0.8
3,482,267	+				-1.0
3,482,277	+				+1.7
3,482,277	+				-2.0
3,482,285	-				+0.3
3,482,285	-				-0.2
3,482,309	-				-0.2
3,482,322	+				-1.8
3,482,376	-				+0.5
3,482,426	+				-0.6
3,482,521	-		Shewana3_2909	0.12	+0.1
3,482,545	+		Shewana3_2909	0.13	+0.4
3,482,545	-		Shewana3_2909	0.13	-0.2
3,482,545	-		Shewana3_2909	0.13	+0.1
3,482,627	-		Shewana3_2909	0.18	+0.3
3,482,629	+		Shewana3_2909	0.19	-1.6
3,482,637	+		Shewana3_2909	0.19	-0.6
3,482,637	+		Shewana3_2909	0.19	+0.7
3,482,637	-		Shewana3_2909	0.19	+0.1
3,482,637	-		Shewana3_2909	0.19	-0.9
3,482,637	-		Shewana3_2909	0.19	+0.3
3,482,639	-		Shewana3_2909	0.19	+0.4
3,482,650	+		Shewana3_2909	0.20	-0.6
3,482,685	+		Shewana3_2909	0.22	+0.6
3,482,693	-		Shewana3_2909	0.23	-0.8
3,482,695	-		Shewana3_2909	0.23	+0.3
3,482,733	-		Shewana3_2909	0.25	-0.1
3,482,796	+		Shewana3_2909	0.29	+0.4
3,482,796	+		Shewana3_2909	0.29	+0.4
3,482,796	+		Shewana3_2909	0.29	+3.0
3,482,796	+		Shewana3_2909	0.29	-0.2
3,482,796	+		Shewana3_2909	0.29	+0.0
3,482,796	+		Shewana3_2909	0.29	-1.2
3,482,796	+		Shewana3_2909	0.29	+1.4
3,482,796	+		Shewana3_2909	0.29	-0.3
3,482,796	+		Shewana3_2909	0.29	+0.4
3,482,796	+		Shewana3_2909	0.29	+1.4
3,482,796	+		Shewana3_2909	0.29	-1.6
3,482,796	+		Shewana3_2909	0.29	+0.4
3,482,796	+		Shewana3_2909	0.29	+0.4
3,482,796	+		Shewana3_2909	0.29	-0.2
3,482,796	+		Shewana3_2909	0.29	-1.4
3,482,796	+		Shewana3_2909	0.29	-0.0
3,482,796	+		Shewana3_2909	0.29	-0.6
3,482,796	+		Shewana3_2909	0.29	+1.4
3,482,804	-		Shewana3_2909	0.30	-0.0
3,482,804	-		Shewana3_2909	0.30	-3.1
3,482,804	-		Shewana3_2909	0.30	+0.7
3,482,804	-		Shewana3_2909	0.30	-1.2
3,482,804	-		Shewana3_2909	0.30	-1.1
3,482,804	-		Shewana3_2909	0.30	-0.6
3,482,804	-		Shewana3_2909	0.30	-0.6
3,482,804	-		Shewana3_2909	0.30	-0.7
3,482,804	-		Shewana3_2909	0.30	+0.1
3,482,804	-		Shewana3_2909	0.30	+0.5
3,482,804	-		Shewana3_2909	0.30	-0.9
3,482,804	-		Shewana3_2909	0.30	+0.7
3,482,804	-		Shewana3_2909	0.30	+0.2
3,482,804	-		Shewana3_2909	0.30	-0.1
3,482,804	-		Shewana3_2909	0.30	-0.2
3,482,804	-		Shewana3_2909	0.30	+0.6
3,482,804	-		Shewana3_2909	0.30	-0.6
3,482,804	-		Shewana3_2909	0.30	-1.3
3,482,804	-		Shewana3_2909	0.30	-0.1
3,482,804	-		Shewana3_2909	0.30	+0.4
3,482,804	-		Shewana3_2909	0.30	+0.4
3,482,804	-		Shewana3_2909	0.30	-0.6
3,482,804	-		Shewana3_2909	0.30	+0.6
3,482,804	-		Shewana3_2909	0.30	-1.9
3,482,804	-		Shewana3_2909	0.30	-0.2
3,482,804	-		Shewana3_2909	0.30	-0.8
3,482,804	-		Shewana3_2909	0.30	-0.9
3,482,804	-		Shewana3_2909	0.30	-0.4
3,482,804	-		Shewana3_2909	0.30	-0.2
3,482,804	-		Shewana3_2909	0.30	-0.3
3,482,815	+		Shewana3_2909	0.30	+0.4
3,482,844	-		Shewana3_2909	0.32	+0.8
3,482,844	-		Shewana3_2909	0.32	-0.3
3,482,963	+		Shewana3_2909	0.40	-2.0
3,482,971	-		Shewana3_2909	0.40	+0.8
3,482,971	-		Shewana3_2909	0.40	-0.8
3,483,015	-		Shewana3_2909	0.43	-0.5
3,483,015	-		Shewana3_2909	0.43	-1.8
3,483,119	+		Shewana3_2909	0.50	+0.4
3,483,119	+		Shewana3_2909	0.50	-0.9
3,483,119	+		Shewana3_2909	0.50	+0.4
3,483,119	+		Shewana3_2909	0.50	+0.4
3,483,119	+		Shewana3_2909	0.50	-0.1
3,483,124	+		Shewana3_2909	0.50	-1.4
3,483,127	-		Shewana3_2909	0.50	-1.8
3,483,127	-		Shewana3_2909	0.50	+1.2
3,483,127	-		Shewana3_2909	0.50	-1.1
3,483,127	-		Shewana3_2909	0.50	+0.4
3,483,127	-		Shewana3_2909	0.50	+1.4
3,483,139	+		Shewana3_2909	0.51	-0.6
3,483,159	-		Shewana3_2909	0.52	-0.9
3,483,159	-		Shewana3_2909	0.52	+0.7
3,483,170	+		Shewana3_2909	0.53	-0.2
3,483,178	-		Shewana3_2909	0.53	-1.9
3,483,261	-		Shewana3_2909	0.59	+0.8
3,483,278	+		Shewana3_2909	0.60	-0.6
3,483,299	-		Shewana3_2909	0.61	+1.4
3,483,324	+		Shewana3_2909	0.63	-0.9
3,483,375	-		Shewana3_2909	0.66	-0.2
3,483,377	-		Shewana3_2909	0.66	+0.4
3,483,451	+		Shewana3_2909	0.71	-1.9
3,483,466	+		Shewana3_2909	0.72	+0.8
3,483,488	-		Shewana3_2909	0.73	-1.0
3,483,529	+		Shewana3_2909	0.76	-0.0
3,483,533	-		Shewana3_2909	0.76	+0.1
3,483,547	-		Shewana3_2909	0.77	-0.6
3,483,574	-		Shewana3_2909	0.78	+0.4
3,483,591	-		Shewana3_2909	0.79	+1.3
3,483,598	-		Shewana3_2909	0.80	-1.4
3,483,602	-		Shewana3_2909	0.80	+0.1
3,483,606	-		Shewana3_2909	0.80	-0.0
3,483,669	+		Shewana3_2909	0.84	-0.6
3,483,677	-		Shewana3_2909	0.85	+0.4
3,483,693	+		Shewana3_2909	0.86	+0.2
3,483,722	-		Shewana3_2909	0.88	-0.4
3,483,727	+		Shewana3_2909	0.88	-0.8
3,483,868	-				+0.1
3,483,875	+				+0.8
3,483,877	-				-1.3
3,483,888	-				+0.4
3,483,893	-				+0.8
3,483,893	-				+0.1
3,483,900	+				-0.6
3,483,923	-				+0.1
3,483,937	+				+0.2
3,483,937	+				-0.3
3,483,940	-				+2.4
3,483,945	-				+1.0
3,483,945	-				-0.7
3,484,006	+				-1.6
3,484,139	-				-0.2
3,484,142	+				+0.4
3,484,150	-				+0.5
3,484,191	-				+0.6
3,484,212	+				-0.9
3,484,227	+				+0.5
3,484,227	+				+0.0
3,484,227	+				-1.2
3,484,235	-				-1.5
3,484,235	-				-0.6
3,484,235	-				+0.3
3,484,235	-				-0.9
3,484,235	-				+0.5
3,484,279	+				+0.3
3,484,320	+				-0.3
3,484,343	-				+0.2
3,484,352	+				-0.6
3,484,370	-				-0.1
3,484,379	+				+1.4
3,484,397	+				-0.4
3,484,405	-				-0.2
3,484,414	+				-0.2
3,484,420	-				-0.6
3,484,426	+				-0.6
3,484,431	-				+0.2
3,484,434	-				+0.5
3,484,434	-				+0.9
3,484,439	-				-0.3
3,484,478	+				-1.1
3,484,608	+				-1.2
3,484,608	+				-0.0
3,484,614	-				-0.8
3,484,614	-				-2.6
3,484,614	-				+0.6
3,484,647	+				-1.6
3,484,650	-				+0.8
3,484,655	-				-0.2
3,484,660	-				+0.8
3,484,682	-				-0.6
3,484,697	+				-0.6
3,484,703	+				+0.4
3,484,711	-				+0.3
3,484,711	-				-1.6
3,484,867	-				+0.8
3,484,886	-				-1.2