Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2529

Experiment: nitrite 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_R0105 and Shewana3_R0106 are separated by 160 nucleotidesShewana3_R0106 and Shewana3_R0107 are separated by 35 nucleotidesShewana3_R0107 and Shewana3_R0108 are separated by 36 nucleotidesShewana3_R0108 and Shewana3_R0109 are separated by 35 nucleotidesShewana3_R0109 and Shewana3_R0110 are separated by 54 nucleotidesShewana3_R0110 and Shewana3_2529 are separated by 142 nucleotidesShewana3_2529 and Shewana3_2530 are separated by 24 nucleotidesShewana3_2530 and Shewana3_2531 are separated by 46 nucleotides Shewana3_R0105: Shewana3_R0105 - tRNA-Lys (RefSeq), at 3,025,256 to 3,025,331 _R0105 Shewana3_R0106: Shewana3_R0106 - tRNA-Lys (RefSeq), at 3,025,492 to 3,025,567 _R0106 Shewana3_R0107: Shewana3_R0107 - tRNA-Lys (RefSeq), at 3,025,603 to 3,025,678 _R0107 Shewana3_R0108: Shewana3_R0108 - tRNA-Lys (RefSeq), at 3,025,715 to 3,025,790 _R0108 Shewana3_R0109: Shewana3_R0109 - tRNA-Lys (RefSeq), at 3,025,826 to 3,025,901 _R0109 Shewana3_R0110: Shewana3_R0110 - tRNA-Lys (RefSeq), at 3,025,956 to 3,026,031 _R0110 Shewana3_2529: Shewana3_2529 - hypothetical protein (RefSeq), at 3,026,174 to 3,026,926 _2529 Shewana3_2530: Shewana3_2530 - OmpA/MotB domain-containing protein (RefSeq), at 3,026,951 to 3,027,487 _2530 Shewana3_2531: Shewana3_2531 - TolB domain-containing protein (RefSeq), at 3,027,534 to 3,028,862 _2531 Position (kb) 3026 3027Strain fitness (log2 ratio) -2 -1 0 1at 3026.255 kb on + strand, within Shewana3_2529at 3026.446 kb on + strand, within Shewana3_2529at 3026.965 kb on - strandat 3026.965 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
remove
3,026,255 + Shewana3_2529 0.11 -1.3
3,026,446 + Shewana3_2529 0.36 -2.0
3,026,965 - +0.2
3,026,965 - +0.2

Or see this region's nucleotide sequence