Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0105 and Shewana3_R0106 are separated by 160 nucleotides Shewana3_R0106 and Shewana3_R0107 are separated by 35 nucleotides Shewana3_R0107 and Shewana3_R0108 are separated by 36 nucleotides Shewana3_R0108 and Shewana3_R0109 are separated by 35 nucleotides Shewana3_R0109 and Shewana3_R0110 are separated by 54 nucleotides Shewana3_R0110 and Shewana3_2529 are separated by 142 nucleotides Shewana3_2529 and Shewana3_2530 are separated by 24 nucleotides Shewana3_2530 and Shewana3_2531 are separated by 46 nucleotides
Shewana3_R0105: Shewana3_R0105 - tRNA-Lys (RefSeq), at 3,025,256 to 3,025,331
_R0105
Shewana3_R0106: Shewana3_R0106 - tRNA-Lys (RefSeq), at 3,025,492 to 3,025,567
_R0106
Shewana3_R0107: Shewana3_R0107 - tRNA-Lys (RefSeq), at 3,025,603 to 3,025,678
_R0107
Shewana3_R0108: Shewana3_R0108 - tRNA-Lys (RefSeq), at 3,025,715 to 3,025,790
_R0108
Shewana3_R0109: Shewana3_R0109 - tRNA-Lys (RefSeq), at 3,025,826 to 3,025,901
_R0109
Shewana3_R0110: Shewana3_R0110 - tRNA-Lys (RefSeq), at 3,025,956 to 3,026,031
_R0110
Shewana3_2529: Shewana3_2529 - hypothetical protein (RefSeq), at 3,026,174 to 3,026,926
_2529
Shewana3_2530: Shewana3_2530 - OmpA/MotB domain-containing protein (RefSeq), at 3,026,951 to 3,027,487
_2530
Shewana3_2531: Shewana3_2531 - TolB domain-containing protein (RefSeq), at 3,027,534 to 3,028,862
_2531
Position (kb)
3026
3027 Strain fitness (log2 ratio)
-2
-1
0
1 at 3026.255 kb on + strand, within Shewana3_2529 at 3026.446 kb on + strand, within Shewana3_2529 at 3026.965 kb on - strand at 3026.965 kb on - strand
Per-strain Table
Or see this region's nucleotide sequence