Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2360 and Shewana3_2361 overlap by 13 nucleotides Shewana3_2361 and Shewana3_2362 are separated by 223 nucleotides Shewana3_2362 and Shewana3_2363 are separated by 24 nucleotides
Shewana3_2360: Shewana3_2360 - IS3 family transposase (RefSeq), at 2,838,079 to 2,838,426
_2360
Shewana3_2361: Shewana3_2361 - integrase catalytic subunit (RefSeq), at 2,838,414 to 2,838,917
_2361
Shewana3_2362: Shewana3_2362 - NnrS family protein (RefSeq), at 2,839,141 to 2,840,352
_2362
Shewana3_2363: Shewana3_2363 - cytochrome c552 (RefSeq), at 2,840,377 to 2,841,810
_2363
Position (kb)
2839
2840
2841 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2838.429 kb on + strand at 2838.588 kb on + strand, within Shewana3_2361 at 2838.664 kb on + strand, within Shewana3_2361 at 2838.902 kb on - strand at 2838.932 kb on + strand at 2839.044 kb on + strand at 2839.344 kb on - strand, within Shewana3_2362 at 2839.564 kb on - strand, within Shewana3_2362 at 2839.854 kb on - strand, within Shewana3_2362 at 2839.856 kb on + strand, within Shewana3_2362 at 2839.909 kb on - strand, within Shewana3_2362 at 2839.991 kb on + strand, within Shewana3_2362 at 2840.059 kb on + strand, within Shewana3_2362 at 2840.202 kb on + strand, within Shewana3_2362 at 2840.304 kb on + strand at 2840.314 kb on + strand at 2840.579 kb on - strand, within Shewana3_2363 at 2840.663 kb on - strand, within Shewana3_2363 at 2840.668 kb on + strand, within Shewana3_2363 at 2840.712 kb on + strand, within Shewana3_2363 at 2840.712 kb on + strand, within Shewana3_2363 at 2840.714 kb on + strand, within Shewana3_2363 at 2840.714 kb on + strand, within Shewana3_2363 at 2840.739 kb on + strand, within Shewana3_2363 at 2840.806 kb on - strand, within Shewana3_2363 at 2840.891 kb on - strand, within Shewana3_2363 at 2840.920 kb on - strand, within Shewana3_2363
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 2,838,429 + -0.9 2,838,588 + Shewana3_2361 0.35 -1.0 2,838,664 + Shewana3_2361 0.50 +0.5 2,838,902 - -1.0 2,838,932 + -0.3 2,839,044 + -0.4 2,839,344 - Shewana3_2362 0.17 -1.2 2,839,564 - Shewana3_2362 0.35 +0.5 2,839,854 - Shewana3_2362 0.59 -1.5 2,839,856 + Shewana3_2362 0.59 +0.7 2,839,909 - Shewana3_2362 0.63 -0.3 2,839,991 + Shewana3_2362 0.70 -2.9 2,840,059 + Shewana3_2362 0.76 +1.3 2,840,202 + Shewana3_2362 0.88 -1.2 2,840,304 + -2.2 2,840,314 + +0.1 2,840,579 - Shewana3_2363 0.14 +0.6 2,840,663 - Shewana3_2363 0.20 +0.3 2,840,668 + Shewana3_2363 0.20 +0.5 2,840,712 + Shewana3_2363 0.23 +2.3 2,840,712 + Shewana3_2363 0.23 +0.3 2,840,714 + Shewana3_2363 0.24 +1.3 2,840,714 + Shewana3_2363 0.24 -0.4 2,840,739 + Shewana3_2363 0.25 +0.3 2,840,806 - Shewana3_2363 0.30 +0.1 2,840,891 - Shewana3_2363 0.36 +0.6 2,840,920 - Shewana3_2363 0.38 +0.2
Or see this region's nucleotide sequence