Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2120

Experiment: nitrite 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2119 and Shewana3_2120 are separated by 317 nucleotidesShewana3_2120 and Shewana3_2121 are separated by 164 nucleotides Shewana3_2119: Shewana3_2119 - mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (RefSeq), at 2,542,351 to 2,543,163 _2119 Shewana3_2120: Shewana3_2120 - hypothetical protein (RefSeq), at 2,543,481 to 2,544,404 _2120 Shewana3_2121: Shewana3_2121 - aromatic amino acid aminotransferase (RefSeq), at 2,544,569 to 2,545,762 _2121 Position (kb) 2543 2544 2545Strain fitness (log2 ratio) -1 0 1at 2542.568 kb on - strand, within Shewana3_2119at 2542.601 kb on + strand, within Shewana3_2119at 2542.774 kb on + strand, within Shewana3_2119at 2542.846 kb on + strand, within Shewana3_2119at 2543.124 kb on - strandat 2543.129 kb on - strandat 2543.285 kb on - strandat 2543.640 kb on + strand, within Shewana3_2120at 2543.645 kb on + strand, within Shewana3_2120at 2543.803 kb on + strand, within Shewana3_2120at 2544.258 kb on - strand, within Shewana3_2120at 2544.333 kb on + strandat 2545.073 kb on + strand, within Shewana3_2121at 2545.081 kb on - strand, within Shewana3_2121at 2545.137 kb on + strand, within Shewana3_2121at 2545.403 kb on - strand, within Shewana3_2121

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
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2,542,568 - Shewana3_2119 0.27 +0.3
2,542,601 + Shewana3_2119 0.31 +0.3
2,542,774 + Shewana3_2119 0.52 +0.3
2,542,846 + Shewana3_2119 0.61 +0.3
2,543,124 - +0.8
2,543,129 - +1.3
2,543,285 - -0.7
2,543,640 + Shewana3_2120 0.17 -1.6
2,543,645 + Shewana3_2120 0.18 -1.1
2,543,803 + Shewana3_2120 0.35 +1.1
2,544,258 - Shewana3_2120 0.84 -1.7
2,544,333 + +0.3
2,545,073 + Shewana3_2121 0.42 -0.3
2,545,081 - Shewana3_2121 0.43 +0.6
2,545,137 + Shewana3_2121 0.48 -0.7
2,545,403 - Shewana3_2121 0.70 +0.9

Or see this region's nucleotide sequence