Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2030

Experiment: nitrite 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 15 mM
2,427,198	-		Shewana3_2029	0.16	-0.3
2,427,198	-		Shewana3_2029	0.16	-1.3
2,427,238	-		Shewana3_2029	0.20	+1.3
2,427,239	+		Shewana3_2029	0.20	-0.3
2,427,265	+		Shewana3_2029	0.22	-0.3
2,427,333	+		Shewana3_2029	0.28	+1.3
2,427,341	-		Shewana3_2029	0.29	-0.3
2,427,420	-		Shewana3_2029	0.36	-0.3
2,427,420	-		Shewana3_2029	0.36	+0.3
2,427,420	-		Shewana3_2029	0.36	+3.3
2,427,454	+		Shewana3_2029	0.39	-0.3
2,427,544	-		Shewana3_2029	0.47	-0.3
2,427,556	+		Shewana3_2029	0.48	-0.5
2,427,579	+		Shewana3_2029	0.50	-0.3
2,427,579	+		Shewana3_2029	0.50	-0.7
2,427,579	+		Shewana3_2029	0.50	+0.3
2,427,579	+		Shewana3_2029	0.50	+1.3
2,427,582	-		Shewana3_2029	0.50	-1.0
2,427,587	-		Shewana3_2029	0.51	+2.3
2,427,587	-		Shewana3_2029	0.51	+0.3
2,427,587	-		Shewana3_2029	0.51	+1.3
2,427,587	-		Shewana3_2029	0.51	-0.7
2,427,587	-		Shewana3_2029	0.51	+1.3
2,427,587	-		Shewana3_2029	0.51	+1.3
2,427,647	-		Shewana3_2029	0.56	-0.3
2,427,694	+		Shewana3_2029	0.60	+1.3
2,427,694	+		Shewana3_2029	0.60	-2.8
2,427,694	+		Shewana3_2029	0.60	-1.0
2,427,694	+		Shewana3_2029	0.60	-2.3
2,427,725	-		Shewana3_2029	0.63	-0.3
2,427,725	-				+1.3
2,427,809	+		Shewana3_2029	0.70	+0.1
2,427,825	+		Shewana3_2029	0.72	-0.3
2,427,970	+		Shewana3_2029	0.84	+0.6
2,427,995	-		Shewana3_2029	0.87	+0.3
2,428,045	+				+1.3
2,428,045	+				+0.6
2,428,045	+				+0.3
2,428,045	+				+1.3
2,428,045	+				-0.8
2,428,054	-				-0.7
2,428,088	+				+0.3
2,428,147	+				+0.3
2,428,158	+				-0.7
2,428,158	+				+1.3
2,428,168	+				-1.5
2,428,197	+				+0.3
2,428,270	-				-0.3
2,428,276	+				-1.4
2,428,296	+				-1.0
2,428,296	+				+0.3
2,428,468	+		Shewana3_2030	0.18	-0.3
2,428,468	+		Shewana3_2030	0.18	+1.3
2,428,484	-		Shewana3_2030	0.19	+0.0
2,428,484	-		Shewana3_2030	0.19	-2.1
2,428,569	+		Shewana3_2030	0.24	+0.5
2,428,569	+		Shewana3_2030	0.24	-1.8
2,428,577	-		Shewana3_2030	0.24	+0.3
2,428,579	+		Shewana3_2030	0.24	+1.3
2,428,624	+		Shewana3_2030	0.27	-0.3
2,428,624	+		Shewana3_2030	0.27	+0.3
2,428,624	+		Shewana3_2030	0.27	-0.3
2,428,624	+		Shewana3_2030	0.27	+0.0
2,428,624	+		Shewana3_2030	0.27	+1.3
2,428,624	+		Shewana3_2030	0.27	+1.3
2,428,624	+		Shewana3_2030	0.27	+0.7
2,428,632	-		Shewana3_2030	0.27	-1.5
2,428,636	+		Shewana3_2030	0.28	+0.0
2,428,642	+		Shewana3_2030	0.28	-0.3
2,428,733	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-1.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.7
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+				+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	-0.7
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	-1.0
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	-0.7
2,428,738	+		Shewana3_2030	0.33	-1.0
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-1.0
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-1.3
2,428,738	+		Shewana3_2030	0.33	-1.0
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.7
2,428,738	+		Shewana3_2030	0.33	+2.3
2,428,738	+		Shewana3_2030	0.33	+1.3
2,428,738	+		Shewana3_2030	0.33	-1.1
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.3
2,428,738	+		Shewana3_2030	0.33	-1.3
2,428,738	+		Shewana3_2030	0.33	+0.3
2,428,738	+		Shewana3_2030	0.33	-0.5
2,428,738	+		Shewana3_2030	0.33	+2.3
2,428,738	+		Shewana3_2030	0.33	+3.3
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-1.9
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	-1.7
2,428,746	-		Shewana3_2030	0.34	-0.8
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	-0.7
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	+0.0
2,428,746	-		Shewana3_2030	0.34	-0.7
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	-0.7
2,428,746	-		Shewana3_2030	0.34	-1.7
2,428,746	-		Shewana3_2030	0.34	-1.1
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	-1.0
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	+1.3
2,428,746	-		Shewana3_2030	0.34	+0.7
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-0.5
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-0.3
2,428,746	-		Shewana3_2030	0.34	+0.3
2,428,746	-		Shewana3_2030	0.34	-1.0
2,428,748	+		Shewana3_2030	0.34	+2.3
2,428,818	+		Shewana3_2030	0.38	-0.3
2,428,818	+		Shewana3_2030	0.38	-0.3
2,428,863	-		Shewana3_2030	0.40	+0.3
2,428,917	+		Shewana3_2030	0.43	+1.3
2,428,917	+		Shewana3_2030	0.43	+0.3
2,428,966	+		Shewana3_2030	0.46	+2.9
2,428,966	+		Shewana3_2030	0.46	+0.1
2,428,966	+		Shewana3_2030	0.46	+0.3
2,429,019	-		Shewana3_2030	0.49	+1.7
2,429,043	-		Shewana3_2030	0.51	-0.7
2,429,126	-		Shewana3_2030	0.55	-0.3
2,429,217	+		Shewana3_2030	0.60	+0.3
2,429,217	+		Shewana3_2030	0.60	+1.3
2,429,225	-		Shewana3_2030	0.61	+0.3
2,429,293	-		Shewana3_2030	0.65	+1.3
2,429,322	+		Shewana3_2030	0.66	+1.3
2,429,322	+		Shewana3_2030	0.66	+1.3
2,429,322	+		Shewana3_2030	0.66	+1.3
2,429,324	+		Shewana3_2030	0.66	+0.7
2,429,324	+		Shewana3_2030	0.66	+0.3
2,429,324	+		Shewana3_2030	0.66	-1.0
2,429,330	-		Shewana3_2030	0.67	-1.1
2,429,334	+		Shewana3_2030	0.67	+0.3
2,429,334	+		Shewana3_2030	0.67	+1.3
2,429,334	+		Shewana3_2030	0.67	-2.0
2,429,334	+		Shewana3_2030	0.67	+1.3
2,429,334	+		Shewana3_2030	0.67	+0.5
2,429,334	+		Shewana3_2030	0.67	-0.4
2,429,334	+		Shewana3_2030	0.67	+1.3
2,429,334	+		Shewana3_2030	0.67	-1.0
2,429,340	-		Shewana3_2030	0.67	-0.3
2,429,342	-		Shewana3_2030	0.67	+1.3
2,429,371	+		Shewana3_2030	0.69	+0.3
2,429,371	+		Shewana3_2030	0.69	-0.7
2,429,454	+		Shewana3_2030	0.74	-0.7
2,429,454	+		Shewana3_2030	0.74	+0.1
2,429,454	+		Shewana3_2030	0.74	-0.7
2,429,519	+				+2.3
2,429,527	-		Shewana3_2030	0.78	-0.3
2,429,533	-		Shewana3_2030	0.78	-0.7
2,429,542	+		Shewana3_2030	0.79	-0.4
2,429,542	+		Shewana3_2030	0.79	+1.3
2,429,550	-		Shewana3_2030	0.79	+0.7
2,429,586	+		Shewana3_2030	0.81	-0.0
2,429,586	+		Shewana3_2030	0.81	-2.0
2,429,628	+		Shewana3_2030	0.84	+0.2
2,429,628	+		Shewana3_2030	0.84	+0.5
2,429,723	+		Shewana3_2030	0.89	+0.8
2,429,781	+				+0.2
2,429,961	+				-0.8
2,429,961	+				-1.3
2,430,011	+				-0.6
2,430,056	+				+0.0
2,430,064	-				+0.3
2,430,148	+				+0.3
2,430,152	+				+0.5
2,430,153	+				-0.3
2,430,153	+				+1.3
2,430,153	+				+0.7
2,430,160	+				+0.2
2,430,160	+				-0.7
2,430,160	+				+0.5
2,430,164	+				-0.5
2,430,165	+				-0.7
2,430,168	-				-0.7
2,430,206	+				+0.3
2,430,248	+		Shewana3_2031	0.17	-0.3
2,430,262	+		Shewana3_2031	0.20	+0.3
2,430,263	+		Shewana3_2031	0.20	+0.6
2,430,319	-		Shewana3_2031	0.30	+0.3
2,430,383	+		Shewana3_2031	0.42	-0.7
2,430,383	+		Shewana3_2031	0.42	+0.0
2,430,391	-		Shewana3_2031	0.44	-0.7
2,430,391	-		Shewana3_2031	0.44	+1.1
2,430,393	+		Shewana3_2031	0.44	+1.3
2,430,464	+		Shewana3_2031	0.57	-0.3
2,430,464	+		Shewana3_2031	0.57	+0.2
2,430,472	-		Shewana3_2031	0.59	+1.3
2,430,477	-		Shewana3_2031	0.59	-0.3
2,430,493	-		Shewana3_2031	0.62	+1.9
2,430,647	+				+0.7
2,430,657	+				-0.9
2,430,665	-				+1.3
2,430,694	+				+1.1
2,430,703	+				+0.6
2,430,710	-				-1.0
2,430,751	+				-0.6
2,430,751	+				-0.3
2,430,879	+		Shewana3_2032	0.11	-0.4