Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2028

Experiment: nitrite 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2027 and Shewana3_2028 are separated by 8 nucleotidesShewana3_2028 and Shewana3_2029 are separated by 21 nucleotides Shewana3_2027: Shewana3_2027 - N-6 DNA methylase (RefSeq), at 2,424,267 to 2,425,808 _2027 Shewana3_2028: Shewana3_2028 - restriction modification system DNA specificity subunit (RefSeq), at 2,425,817 to 2,426,992 _2028 Shewana3_2029: Shewana3_2029 - hypothetical protein (RefSeq), at 2,427,014 to 2,428,147 _2029 Position (kb) 2425 2426 2427Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2424.907 kb on - strand, within Shewana3_2027at 2425.096 kb on + strand, within Shewana3_2027at 2425.096 kb on + strand, within Shewana3_2027at 2425.144 kb on + strand, within Shewana3_2027at 2425.389 kb on + strand, within Shewana3_2027at 2425.700 kb on + strandat 2425.740 kb on - strandat 2425.846 kb on + strandat 2425.871 kb on + strandat 2425.879 kb on + strandat 2426.026 kb on + strand, within Shewana3_2028at 2426.050 kb on + strand, within Shewana3_2028at 2426.058 kb on - strand, within Shewana3_2028at 2426.058 kb on - strand, within Shewana3_2028at 2426.198 kb on + strand, within Shewana3_2028at 2426.282 kb on + strand, within Shewana3_2028at 2426.285 kb on - strand, within Shewana3_2028at 2426.317 kb on + strand, within Shewana3_2028at 2426.465 kb on + strand, within Shewana3_2028at 2426.471 kb on + strand, within Shewana3_2028at 2426.471 kb on + strand, within Shewana3_2028at 2426.508 kb on + strand, within Shewana3_2028at 2426.510 kb on + strand, within Shewana3_2028at 2426.618 kb on + strand, within Shewana3_2028at 2426.618 kb on + strand, within Shewana3_2028at 2426.626 kb on - strand, within Shewana3_2028at 2426.626 kb on - strand, within Shewana3_2028at 2426.645 kb on + strand, within Shewana3_2028at 2426.646 kb on + strand, within Shewana3_2028at 2426.646 kb on + strand, within Shewana3_2028at 2426.646 kb on + strand, within Shewana3_2028at 2426.646 kb on + strand, within Shewana3_2028at 2426.646 kb on + strand, within Shewana3_2028at 2426.654 kb on - strand, within Shewana3_2028at 2426.713 kb on - strand, within Shewana3_2028at 2426.945 kb on - strandat 2427.136 kb on + strand, within Shewana3_2029at 2427.145 kb on - strand, within Shewana3_2029at 2427.145 kb on - strand, within Shewana3_2029at 2427.198 kb on - strand, within Shewana3_2029at 2427.198 kb on - strand, within Shewana3_2029at 2427.238 kb on - strand, within Shewana3_2029at 2427.239 kb on + strand, within Shewana3_2029at 2427.265 kb on + strand, within Shewana3_2029at 2427.333 kb on + strand, within Shewana3_2029at 2427.341 kb on - strand, within Shewana3_2029at 2427.420 kb on - strand, within Shewana3_2029at 2427.420 kb on - strand, within Shewana3_2029at 2427.420 kb on - strand, within Shewana3_2029at 2427.454 kb on + strand, within Shewana3_2029at 2427.544 kb on - strand, within Shewana3_2029at 2427.556 kb on + strand, within Shewana3_2029at 2427.579 kb on + strand, within Shewana3_2029at 2427.579 kb on + strand, within Shewana3_2029at 2427.579 kb on + strand, within Shewana3_2029at 2427.579 kb on + strand, within Shewana3_2029at 2427.582 kb on - strand, within Shewana3_2029at 2427.587 kb on - strand, within Shewana3_2029at 2427.587 kb on - strand, within Shewana3_2029at 2427.587 kb on - strand, within Shewana3_2029at 2427.587 kb on - strand, within Shewana3_2029at 2427.587 kb on - strand, within Shewana3_2029at 2427.587 kb on - strand, within Shewana3_2029at 2427.647 kb on - strand, within Shewana3_2029at 2427.694 kb on + strand, within Shewana3_2029at 2427.694 kb on + strand, within Shewana3_2029at 2427.694 kb on + strand, within Shewana3_2029at 2427.694 kb on + strand, within Shewana3_2029at 2427.725 kb on - strand, within Shewana3_2029at 2427.725 kb on - strandat 2427.809 kb on + strand, within Shewana3_2029at 2427.825 kb on + strand, within Shewana3_2029at 2427.970 kb on + strand, within Shewana3_2029

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
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2,424,907 - Shewana3_2027 0.42 +0.9
2,425,096 + Shewana3_2027 0.54 +0.7
2,425,096 + Shewana3_2027 0.54 +0.6
2,425,144 + Shewana3_2027 0.57 +0.7
2,425,389 + Shewana3_2027 0.73 -0.5
2,425,700 + +0.0
2,425,740 - -0.8
2,425,846 + -1.7
2,425,871 + +0.7
2,425,879 + -1.0
2,426,026 + Shewana3_2028 0.18 +0.3
2,426,050 + Shewana3_2028 0.20 -0.3
2,426,058 - Shewana3_2028 0.20 -1.0
2,426,058 - Shewana3_2028 0.20 -0.3
2,426,198 + Shewana3_2028 0.32 -0.3
2,426,282 + Shewana3_2028 0.40 +1.6
2,426,285 - Shewana3_2028 0.40 +1.3
2,426,317 + Shewana3_2028 0.43 -1.5
2,426,465 + Shewana3_2028 0.55 -0.7
2,426,471 + Shewana3_2028 0.56 +1.0
2,426,471 + Shewana3_2028 0.56 +1.3
2,426,508 + Shewana3_2028 0.59 -0.3
2,426,510 + Shewana3_2028 0.59 -1.5
2,426,618 + Shewana3_2028 0.68 -1.3
2,426,618 + Shewana3_2028 0.68 -0.9
2,426,626 - Shewana3_2028 0.69 +0.3
2,426,626 - Shewana3_2028 0.69 +0.3
2,426,645 + Shewana3_2028 0.70 +0.3
2,426,646 + Shewana3_2028 0.70 -0.7
2,426,646 + Shewana3_2028 0.70 +1.3
2,426,646 + Shewana3_2028 0.70 -1.0
2,426,646 + Shewana3_2028 0.70 -0.7
2,426,646 + Shewana3_2028 0.70 +0.0
2,426,654 - Shewana3_2028 0.71 -0.3
2,426,713 - Shewana3_2028 0.76 -0.3
2,426,945 - +0.3
2,427,136 + Shewana3_2029 0.11 +0.3
2,427,145 - Shewana3_2029 0.12 -0.8
2,427,145 - Shewana3_2029 0.12 -0.7
2,427,198 - Shewana3_2029 0.16 -0.3
2,427,198 - Shewana3_2029 0.16 -1.3
2,427,238 - Shewana3_2029 0.20 +1.3
2,427,239 + Shewana3_2029 0.20 -0.3
2,427,265 + Shewana3_2029 0.22 -0.3
2,427,333 + Shewana3_2029 0.28 +1.3
2,427,341 - Shewana3_2029 0.29 -0.3
2,427,420 - Shewana3_2029 0.36 -0.3
2,427,420 - Shewana3_2029 0.36 +0.3
2,427,420 - Shewana3_2029 0.36 +3.3
2,427,454 + Shewana3_2029 0.39 -0.3
2,427,544 - Shewana3_2029 0.47 -0.3
2,427,556 + Shewana3_2029 0.48 -0.5
2,427,579 + Shewana3_2029 0.50 -0.3
2,427,579 + Shewana3_2029 0.50 -0.7
2,427,579 + Shewana3_2029 0.50 +0.3
2,427,579 + Shewana3_2029 0.50 +1.3
2,427,582 - Shewana3_2029 0.50 -1.0
2,427,587 - Shewana3_2029 0.51 +2.3
2,427,587 - Shewana3_2029 0.51 +0.3
2,427,587 - Shewana3_2029 0.51 +1.3
2,427,587 - Shewana3_2029 0.51 -0.7
2,427,587 - Shewana3_2029 0.51 +1.3
2,427,587 - Shewana3_2029 0.51 +1.3
2,427,647 - Shewana3_2029 0.56 -0.3
2,427,694 + Shewana3_2029 0.60 +1.3
2,427,694 + Shewana3_2029 0.60 -2.8
2,427,694 + Shewana3_2029 0.60 -1.0
2,427,694 + Shewana3_2029 0.60 -2.3
2,427,725 - Shewana3_2029 0.63 -0.3
2,427,725 - +1.3
2,427,809 + Shewana3_2029 0.70 +0.1
2,427,825 + Shewana3_2029 0.72 -0.3
2,427,970 + Shewana3_2029 0.84 +0.6

Or see this region's nucleotide sequence