Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2027 and Shewana3_2028 are separated by 8 nucleotides Shewana3_2028 and Shewana3_2029 are separated by 21 nucleotides
Shewana3_2027: Shewana3_2027 - N-6 DNA methylase (RefSeq), at 2,424,267 to 2,425,808
_2027
Shewana3_2028: Shewana3_2028 - restriction modification system DNA specificity subunit (RefSeq), at 2,425,817 to 2,426,992
_2028
Shewana3_2029: Shewana3_2029 - hypothetical protein (RefSeq), at 2,427,014 to 2,428,147
_2029
Position (kb)
2425
2426
2427 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2424.907 kb on - strand, within Shewana3_2027 at 2425.096 kb on + strand, within Shewana3_2027 at 2425.096 kb on + strand, within Shewana3_2027 at 2425.144 kb on + strand, within Shewana3_2027 at 2425.389 kb on + strand, within Shewana3_2027 at 2425.700 kb on + strand at 2425.740 kb on - strand at 2425.846 kb on + strand at 2425.871 kb on + strand at 2425.879 kb on + strand at 2426.026 kb on + strand, within Shewana3_2028 at 2426.050 kb on + strand, within Shewana3_2028 at 2426.058 kb on - strand, within Shewana3_2028 at 2426.058 kb on - strand, within Shewana3_2028 at 2426.198 kb on + strand, within Shewana3_2028 at 2426.282 kb on + strand, within Shewana3_2028 at 2426.285 kb on - strand, within Shewana3_2028 at 2426.317 kb on + strand, within Shewana3_2028 at 2426.465 kb on + strand, within Shewana3_2028 at 2426.471 kb on + strand, within Shewana3_2028 at 2426.471 kb on + strand, within Shewana3_2028 at 2426.508 kb on + strand, within Shewana3_2028 at 2426.510 kb on + strand, within Shewana3_2028 at 2426.618 kb on + strand, within Shewana3_2028 at 2426.618 kb on + strand, within Shewana3_2028 at 2426.626 kb on - strand, within Shewana3_2028 at 2426.626 kb on - strand, within Shewana3_2028 at 2426.645 kb on + strand, within Shewana3_2028 at 2426.646 kb on + strand, within Shewana3_2028 at 2426.646 kb on + strand, within Shewana3_2028 at 2426.646 kb on + strand, within Shewana3_2028 at 2426.646 kb on + strand, within Shewana3_2028 at 2426.646 kb on + strand, within Shewana3_2028 at 2426.654 kb on - strand, within Shewana3_2028 at 2426.713 kb on - strand, within Shewana3_2028 at 2426.945 kb on - strand at 2427.136 kb on + strand, within Shewana3_2029 at 2427.145 kb on - strand, within Shewana3_2029 at 2427.145 kb on - strand, within Shewana3_2029 at 2427.198 kb on - strand, within Shewana3_2029 at 2427.198 kb on - strand, within Shewana3_2029 at 2427.238 kb on - strand, within Shewana3_2029 at 2427.239 kb on + strand, within Shewana3_2029 at 2427.265 kb on + strand, within Shewana3_2029 at 2427.333 kb on + strand, within Shewana3_2029 at 2427.341 kb on - strand, within Shewana3_2029 at 2427.420 kb on - strand, within Shewana3_2029 at 2427.420 kb on - strand, within Shewana3_2029 at 2427.420 kb on - strand, within Shewana3_2029 at 2427.454 kb on + strand, within Shewana3_2029 at 2427.544 kb on - strand, within Shewana3_2029 at 2427.556 kb on + strand, within Shewana3_2029 at 2427.579 kb on + strand, within Shewana3_2029 at 2427.579 kb on + strand, within Shewana3_2029 at 2427.579 kb on + strand, within Shewana3_2029 at 2427.579 kb on + strand, within Shewana3_2029 at 2427.582 kb on - strand, within Shewana3_2029 at 2427.587 kb on - strand, within Shewana3_2029 at 2427.587 kb on - strand, within Shewana3_2029 at 2427.587 kb on - strand, within Shewana3_2029 at 2427.587 kb on - strand, within Shewana3_2029 at 2427.587 kb on - strand, within Shewana3_2029 at 2427.587 kb on - strand, within Shewana3_2029 at 2427.647 kb on - strand, within Shewana3_2029 at 2427.694 kb on + strand, within Shewana3_2029 at 2427.694 kb on + strand, within Shewana3_2029 at 2427.694 kb on + strand, within Shewana3_2029 at 2427.694 kb on + strand, within Shewana3_2029 at 2427.725 kb on - strand, within Shewana3_2029 at 2427.725 kb on - strand at 2427.809 kb on + strand, within Shewana3_2029 at 2427.825 kb on + strand, within Shewana3_2029 at 2427.970 kb on + strand, within Shewana3_2029
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 2,424,907 - Shewana3_2027 0.42 +0.9 2,425,096 + Shewana3_2027 0.54 +0.7 2,425,096 + Shewana3_2027 0.54 +0.6 2,425,144 + Shewana3_2027 0.57 +0.7 2,425,389 + Shewana3_2027 0.73 -0.5 2,425,700 + +0.0 2,425,740 - -0.8 2,425,846 + -1.7 2,425,871 + +0.7 2,425,879 + -1.0 2,426,026 + Shewana3_2028 0.18 +0.3 2,426,050 + Shewana3_2028 0.20 -0.3 2,426,058 - Shewana3_2028 0.20 -1.0 2,426,058 - Shewana3_2028 0.20 -0.3 2,426,198 + Shewana3_2028 0.32 -0.3 2,426,282 + Shewana3_2028 0.40 +1.6 2,426,285 - Shewana3_2028 0.40 +1.3 2,426,317 + Shewana3_2028 0.43 -1.5 2,426,465 + Shewana3_2028 0.55 -0.7 2,426,471 + Shewana3_2028 0.56 +1.0 2,426,471 + Shewana3_2028 0.56 +1.3 2,426,508 + Shewana3_2028 0.59 -0.3 2,426,510 + Shewana3_2028 0.59 -1.5 2,426,618 + Shewana3_2028 0.68 -1.3 2,426,618 + Shewana3_2028 0.68 -0.9 2,426,626 - Shewana3_2028 0.69 +0.3 2,426,626 - Shewana3_2028 0.69 +0.3 2,426,645 + Shewana3_2028 0.70 +0.3 2,426,646 + Shewana3_2028 0.70 -0.7 2,426,646 + Shewana3_2028 0.70 +1.3 2,426,646 + Shewana3_2028 0.70 -1.0 2,426,646 + Shewana3_2028 0.70 -0.7 2,426,646 + Shewana3_2028 0.70 +0.0 2,426,654 - Shewana3_2028 0.71 -0.3 2,426,713 - Shewana3_2028 0.76 -0.3 2,426,945 - +0.3 2,427,136 + Shewana3_2029 0.11 +0.3 2,427,145 - Shewana3_2029 0.12 -0.8 2,427,145 - Shewana3_2029 0.12 -0.7 2,427,198 - Shewana3_2029 0.16 -0.3 2,427,198 - Shewana3_2029 0.16 -1.3 2,427,238 - Shewana3_2029 0.20 +1.3 2,427,239 + Shewana3_2029 0.20 -0.3 2,427,265 + Shewana3_2029 0.22 -0.3 2,427,333 + Shewana3_2029 0.28 +1.3 2,427,341 - Shewana3_2029 0.29 -0.3 2,427,420 - Shewana3_2029 0.36 -0.3 2,427,420 - Shewana3_2029 0.36 +0.3 2,427,420 - Shewana3_2029 0.36 +3.3 2,427,454 + Shewana3_2029 0.39 -0.3 2,427,544 - Shewana3_2029 0.47 -0.3 2,427,556 + Shewana3_2029 0.48 -0.5 2,427,579 + Shewana3_2029 0.50 -0.3 2,427,579 + Shewana3_2029 0.50 -0.7 2,427,579 + Shewana3_2029 0.50 +0.3 2,427,579 + Shewana3_2029 0.50 +1.3 2,427,582 - Shewana3_2029 0.50 -1.0 2,427,587 - Shewana3_2029 0.51 +2.3 2,427,587 - Shewana3_2029 0.51 +0.3 2,427,587 - Shewana3_2029 0.51 +1.3 2,427,587 - Shewana3_2029 0.51 -0.7 2,427,587 - Shewana3_2029 0.51 +1.3 2,427,587 - Shewana3_2029 0.51 +1.3 2,427,647 - Shewana3_2029 0.56 -0.3 2,427,694 + Shewana3_2029 0.60 +1.3 2,427,694 + Shewana3_2029 0.60 -2.8 2,427,694 + Shewana3_2029 0.60 -1.0 2,427,694 + Shewana3_2029 0.60 -2.3 2,427,725 - Shewana3_2029 0.63 -0.3 2,427,725 - +1.3 2,427,809 + Shewana3_2029 0.70 +0.1 2,427,825 + Shewana3_2029 0.72 -0.3 2,427,970 + Shewana3_2029 0.84 +0.6
Or see this region's nucleotide sequence