Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2017 and Shewana3_R0085 are separated by 596 nucleotides Shewana3_R0085 and Shewana3_2018 are separated by 286 nucleotides Shewana3_2018 and Shewana3_2019 overlap by 4 nucleotides
Shewana3_2017: Shewana3_2017 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,407,242 to 2,408,873
_2017
Shewana3_R0085: Shewana3_R0085 - tRNA-Val (RefSeq), at 2,409,470 to 2,409,546
_R0085
Shewana3_2018: Shewana3_2018 - hypothetical protein (RefSeq), at 2,409,833 to 2,410,414
_2018
Shewana3_2019: Shewana3_2019 - hypothetical protein (RefSeq), at 2,410,411 to 2,412,951
_2019
Position (kb)
2409
2410
2411 Strain fitness (log2 ratio)
-2
-1
0
1 at 2408.843 kb on + strand at 2409.032 kb on + strand at 2409.133 kb on + strand at 2409.141 kb on - strand at 2409.148 kb on - strand at 2409.214 kb on + strand at 2409.329 kb on + strand at 2409.337 kb on - strand at 2409.462 kb on - strand at 2409.601 kb on - strand at 2409.675 kb on - strand at 2409.821 kb on + strand at 2409.821 kb on + strand at 2409.821 kb on + strand at 2409.821 kb on + strand at 2409.821 kb on + strand at 2409.821 kb on + strand at 2409.821 kb on + strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2409.829 kb on - strand at 2410.013 kb on + strand, within Shewana3_2018 at 2410.014 kb on + strand, within Shewana3_2018 at 2410.022 kb on - strand, within Shewana3_2018 at 2410.022 kb on - strand, within Shewana3_2018 at 2410.022 kb on - strand, within Shewana3_2018 at 2410.048 kb on - strand, within Shewana3_2018 at 2410.059 kb on + strand, within Shewana3_2018 at 2410.064 kb on + strand, within Shewana3_2018 at 2410.067 kb on - strand, within Shewana3_2018 at 2410.112 kb on - strand, within Shewana3_2018 at 2410.243 kb on + strand, within Shewana3_2018 at 2410.260 kb on + strand, within Shewana3_2018 at 2410.268 kb on - strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.285 kb on + strand, within Shewana3_2018 at 2410.286 kb on - strand, within Shewana3_2018 at 2410.293 kb on - strand, within Shewana3_2018 at 2410.293 kb on - strand, within Shewana3_2018 at 2410.293 kb on - strand, within Shewana3_2018 at 2410.293 kb on - strand, within Shewana3_2018 at 2410.293 kb on - strand, within Shewana3_2018 at 2410.293 kb on - strand, within Shewana3_2018 at 2410.387 kb on - strand at 2410.426 kb on - strand at 2410.432 kb on - strand at 2410.486 kb on + strand at 2410.502 kb on + strand at 2410.558 kb on - strand at 2410.566 kb on - strand at 2410.624 kb on + strand at 2410.632 kb on - strand at 2410.637 kb on - strand at 2410.794 kb on - strand, within Shewana3_2019 at 2410.799 kb on + strand, within Shewana3_2019 at 2410.816 kb on + strand, within Shewana3_2019 at 2410.817 kb on - strand, within Shewana3_2019 at 2410.830 kb on + strand, within Shewana3_2019 at 2410.838 kb on - strand, within Shewana3_2019 at 2410.859 kb on + strand, within Shewana3_2019 at 2410.859 kb on + strand, within Shewana3_2019 at 2410.867 kb on - strand, within Shewana3_2019 at 2410.867 kb on - strand, within Shewana3_2019 at 2410.894 kb on + strand, within Shewana3_2019 at 2410.894 kb on + strand, within Shewana3_2019 at 2410.904 kb on + strand, within Shewana3_2019 at 2410.945 kb on + strand, within Shewana3_2019 at 2411.049 kb on - strand, within Shewana3_2019 at 2411.156 kb on + strand, within Shewana3_2019 at 2411.236 kb on + strand, within Shewana3_2019 at 2411.244 kb on - strand, within Shewana3_2019 at 2411.245 kb on + strand, within Shewana3_2019 at 2411.255 kb on + strand, within Shewana3_2019 at 2411.263 kb on - strand, within Shewana3_2019 at 2411.288 kb on + strand at 2411.288 kb on + strand, within Shewana3_2019 at 2411.300 kb on + strand, within Shewana3_2019 at 2411.306 kb on - strand, within Shewana3_2019 at 2411.330 kb on + strand, within Shewana3_2019 at 2411.371 kb on + strand, within Shewana3_2019 at 2411.371 kb on + strand, within Shewana3_2019 at 2411.371 kb on + strand, within Shewana3_2019 at 2411.371 kb on + strand, within Shewana3_2019 at 2411.376 kb on + strand, within Shewana3_2019 at 2411.384 kb on - strand, within Shewana3_2019 at 2411.384 kb on - strand, within Shewana3_2019 at 2411.409 kb on - strand, within Shewana3_2019
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 2,408,843 + -0.7 2,409,032 + -1.1 2,409,133 + -2.3 2,409,141 - -0.9 2,409,148 - -0.5 2,409,214 + -0.7 2,409,329 + +0.3 2,409,337 - +0.9 2,409,462 - -1.0 2,409,601 - +0.3 2,409,675 - -1.5 2,409,821 + +0.3 2,409,821 + +0.5 2,409,821 + +1.0 2,409,821 + +0.9 2,409,821 + +0.6 2,409,821 + +0.3 2,409,821 + -1.2 2,409,829 - +0.4 2,409,829 - +1.3 2,409,829 - +1.3 2,409,829 - +0.9 2,409,829 - -0.3 2,409,829 - -2.3 2,409,829 - +0.3 2,409,829 - +0.3 2,409,829 - +0.7 2,409,829 - -0.3 2,410,013 + Shewana3_2018 0.31 -2.4 2,410,014 + Shewana3_2018 0.31 +0.0 2,410,022 - Shewana3_2018 0.32 +0.9 2,410,022 - Shewana3_2018 0.32 -1.5 2,410,022 - Shewana3_2018 0.32 -0.7 2,410,048 - Shewana3_2018 0.37 +0.3 2,410,059 + Shewana3_2018 0.39 +1.3 2,410,064 + Shewana3_2018 0.40 -2.0 2,410,067 - Shewana3_2018 0.40 -1.8 2,410,112 - Shewana3_2018 0.48 -1.5 2,410,243 + Shewana3_2018 0.70 -0.7 2,410,260 + Shewana3_2018 0.73 -0.3 2,410,268 - Shewana3_2018 0.75 -0.7 2,410,285 + Shewana3_2018 0.78 +0.3 2,410,285 + Shewana3_2018 0.78 -0.3 2,410,285 + Shewana3_2018 0.78 -0.3 2,410,285 + Shewana3_2018 0.78 +0.3 2,410,285 + Shewana3_2018 0.78 -0.3 2,410,285 + Shewana3_2018 0.78 +0.3 2,410,285 + Shewana3_2018 0.78 +0.0 2,410,285 + Shewana3_2018 0.78 -1.1 2,410,285 + Shewana3_2018 0.78 -0.3 2,410,285 + Shewana3_2018 0.78 +1.1 2,410,285 + Shewana3_2018 0.78 +1.3 2,410,286 - Shewana3_2018 0.78 -0.4 2,410,293 - Shewana3_2018 0.79 +1.3 2,410,293 - Shewana3_2018 0.79 +1.3 2,410,293 - Shewana3_2018 0.79 +1.3 2,410,293 - Shewana3_2018 0.79 +1.3 2,410,293 - Shewana3_2018 0.79 +0.3 2,410,293 - Shewana3_2018 0.79 +0.3 2,410,387 - -0.3 2,410,426 - -1.0 2,410,432 - +1.3 2,410,486 + +0.3 2,410,502 + -1.5 2,410,558 - +1.3 2,410,566 - +1.3 2,410,624 + +0.9 2,410,632 - -1.5 2,410,637 - -1.7 2,410,794 - Shewana3_2019 0.15 +1.3 2,410,799 + Shewana3_2019 0.15 +0.0 2,410,816 + Shewana3_2019 0.16 +1.3 2,410,817 - Shewana3_2019 0.16 +0.3 2,410,830 + Shewana3_2019 0.16 +1.3 2,410,838 - Shewana3_2019 0.17 -1.0 2,410,859 + Shewana3_2019 0.18 -0.3 2,410,859 + Shewana3_2019 0.18 -0.1 2,410,867 - Shewana3_2019 0.18 -1.8 2,410,867 - Shewana3_2019 0.18 -0.7 2,410,894 + Shewana3_2019 0.19 +0.3 2,410,894 + Shewana3_2019 0.19 -0.3 2,410,904 + Shewana3_2019 0.19 +0.3 2,410,945 + Shewana3_2019 0.21 -0.7 2,411,049 - Shewana3_2019 0.25 +0.3 2,411,156 + Shewana3_2019 0.29 -0.3 2,411,236 + Shewana3_2019 0.32 -0.3 2,411,244 - Shewana3_2019 0.33 -0.1 2,411,245 + Shewana3_2019 0.33 -0.7 2,411,255 + Shewana3_2019 0.33 -1.3 2,411,263 - Shewana3_2019 0.34 +0.0 2,411,288 + +1.3 2,411,288 + Shewana3_2019 0.35 +0.3 2,411,300 + Shewana3_2019 0.35 +0.7 2,411,306 - Shewana3_2019 0.35 -0.3 2,411,330 + Shewana3_2019 0.36 +0.2 2,411,371 + Shewana3_2019 0.38 +1.5 2,411,371 + Shewana3_2019 0.38 -0.7 2,411,371 + Shewana3_2019 0.38 -0.3 2,411,371 + Shewana3_2019 0.38 -1.0 2,411,376 + Shewana3_2019 0.38 -0.3 2,411,384 - Shewana3_2019 0.38 -1.3 2,411,384 - Shewana3_2019 0.38 +0.3 2,411,409 - Shewana3_2019 0.39 -0.5
Or see this region's nucleotide sequence