Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2018

Experiment: nitrite 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2017 and Shewana3_R0085 are separated by 596 nucleotidesShewana3_R0085 and Shewana3_2018 are separated by 286 nucleotidesShewana3_2018 and Shewana3_2019 overlap by 4 nucleotides Shewana3_2017: Shewana3_2017 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,407,242 to 2,408,873 _2017 Shewana3_R0085: Shewana3_R0085 - tRNA-Val (RefSeq), at 2,409,470 to 2,409,546 _R0085 Shewana3_2018: Shewana3_2018 - hypothetical protein (RefSeq), at 2,409,833 to 2,410,414 _2018 Shewana3_2019: Shewana3_2019 - hypothetical protein (RefSeq), at 2,410,411 to 2,412,951 _2019 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -2 -1 0 1at 2408.843 kb on + strandat 2409.032 kb on + strandat 2409.133 kb on + strandat 2409.141 kb on - strandat 2409.148 kb on - strandat 2409.214 kb on + strandat 2409.329 kb on + strandat 2409.337 kb on - strandat 2409.462 kb on - strandat 2409.601 kb on - strandat 2409.675 kb on - strandat 2409.821 kb on + strandat 2409.821 kb on + strandat 2409.821 kb on + strandat 2409.821 kb on + strandat 2409.821 kb on + strandat 2409.821 kb on + strandat 2409.821 kb on + strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2409.829 kb on - strandat 2410.013 kb on + strand, within Shewana3_2018at 2410.014 kb on + strand, within Shewana3_2018at 2410.022 kb on - strand, within Shewana3_2018at 2410.022 kb on - strand, within Shewana3_2018at 2410.022 kb on - strand, within Shewana3_2018at 2410.048 kb on - strand, within Shewana3_2018at 2410.059 kb on + strand, within Shewana3_2018at 2410.064 kb on + strand, within Shewana3_2018at 2410.067 kb on - strand, within Shewana3_2018at 2410.112 kb on - strand, within Shewana3_2018at 2410.243 kb on + strand, within Shewana3_2018at 2410.260 kb on + strand, within Shewana3_2018at 2410.268 kb on - strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.285 kb on + strand, within Shewana3_2018at 2410.286 kb on - strand, within Shewana3_2018at 2410.293 kb on - strand, within Shewana3_2018at 2410.293 kb on - strand, within Shewana3_2018at 2410.293 kb on - strand, within Shewana3_2018at 2410.293 kb on - strand, within Shewana3_2018at 2410.293 kb on - strand, within Shewana3_2018at 2410.293 kb on - strand, within Shewana3_2018at 2410.387 kb on - strandat 2410.426 kb on - strandat 2410.432 kb on - strandat 2410.486 kb on + strandat 2410.502 kb on + strandat 2410.558 kb on - strandat 2410.566 kb on - strandat 2410.624 kb on + strandat 2410.632 kb on - strandat 2410.637 kb on - strandat 2410.794 kb on - strand, within Shewana3_2019at 2410.799 kb on + strand, within Shewana3_2019at 2410.816 kb on + strand, within Shewana3_2019at 2410.817 kb on - strand, within Shewana3_2019at 2410.830 kb on + strand, within Shewana3_2019at 2410.838 kb on - strand, within Shewana3_2019at 2410.859 kb on + strand, within Shewana3_2019at 2410.859 kb on + strand, within Shewana3_2019at 2410.867 kb on - strand, within Shewana3_2019at 2410.867 kb on - strand, within Shewana3_2019at 2410.894 kb on + strand, within Shewana3_2019at 2410.894 kb on + strand, within Shewana3_2019at 2410.904 kb on + strand, within Shewana3_2019at 2410.945 kb on + strand, within Shewana3_2019at 2411.049 kb on - strand, within Shewana3_2019at 2411.156 kb on + strand, within Shewana3_2019at 2411.236 kb on + strand, within Shewana3_2019at 2411.244 kb on - strand, within Shewana3_2019at 2411.245 kb on + strand, within Shewana3_2019at 2411.255 kb on + strand, within Shewana3_2019at 2411.263 kb on - strand, within Shewana3_2019at 2411.288 kb on + strandat 2411.288 kb on + strand, within Shewana3_2019at 2411.300 kb on + strand, within Shewana3_2019at 2411.306 kb on - strand, within Shewana3_2019at 2411.330 kb on + strand, within Shewana3_2019at 2411.371 kb on + strand, within Shewana3_2019at 2411.371 kb on + strand, within Shewana3_2019at 2411.371 kb on + strand, within Shewana3_2019at 2411.371 kb on + strand, within Shewana3_2019at 2411.376 kb on + strand, within Shewana3_2019at 2411.384 kb on - strand, within Shewana3_2019at 2411.384 kb on - strand, within Shewana3_2019at 2411.409 kb on - strand, within Shewana3_2019

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
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2,408,843 + -0.7
2,409,032 + -1.1
2,409,133 + -2.3
2,409,141 - -0.9
2,409,148 - -0.5
2,409,214 + -0.7
2,409,329 + +0.3
2,409,337 - +0.9
2,409,462 - -1.0
2,409,601 - +0.3
2,409,675 - -1.5
2,409,821 + +0.3
2,409,821 + +0.5
2,409,821 + +1.0
2,409,821 + +0.9
2,409,821 + +0.6
2,409,821 + +0.3
2,409,821 + -1.2
2,409,829 - +0.4
2,409,829 - +1.3
2,409,829 - +1.3
2,409,829 - +0.9
2,409,829 - -0.3
2,409,829 - -2.3
2,409,829 - +0.3
2,409,829 - +0.3
2,409,829 - +0.7
2,409,829 - -0.3
2,410,013 + Shewana3_2018 0.31 -2.4
2,410,014 + Shewana3_2018 0.31 +0.0
2,410,022 - Shewana3_2018 0.32 +0.9
2,410,022 - Shewana3_2018 0.32 -1.5
2,410,022 - Shewana3_2018 0.32 -0.7
2,410,048 - Shewana3_2018 0.37 +0.3
2,410,059 + Shewana3_2018 0.39 +1.3
2,410,064 + Shewana3_2018 0.40 -2.0
2,410,067 - Shewana3_2018 0.40 -1.8
2,410,112 - Shewana3_2018 0.48 -1.5
2,410,243 + Shewana3_2018 0.70 -0.7
2,410,260 + Shewana3_2018 0.73 -0.3
2,410,268 - Shewana3_2018 0.75 -0.7
2,410,285 + Shewana3_2018 0.78 +0.3
2,410,285 + Shewana3_2018 0.78 -0.3
2,410,285 + Shewana3_2018 0.78 -0.3
2,410,285 + Shewana3_2018 0.78 +0.3
2,410,285 + Shewana3_2018 0.78 -0.3
2,410,285 + Shewana3_2018 0.78 +0.3
2,410,285 + Shewana3_2018 0.78 +0.0
2,410,285 + Shewana3_2018 0.78 -1.1
2,410,285 + Shewana3_2018 0.78 -0.3
2,410,285 + Shewana3_2018 0.78 +1.1
2,410,285 + Shewana3_2018 0.78 +1.3
2,410,286 - Shewana3_2018 0.78 -0.4
2,410,293 - Shewana3_2018 0.79 +1.3
2,410,293 - Shewana3_2018 0.79 +1.3
2,410,293 - Shewana3_2018 0.79 +1.3
2,410,293 - Shewana3_2018 0.79 +1.3
2,410,293 - Shewana3_2018 0.79 +0.3
2,410,293 - Shewana3_2018 0.79 +0.3
2,410,387 - -0.3
2,410,426 - -1.0
2,410,432 - +1.3
2,410,486 + +0.3
2,410,502 + -1.5
2,410,558 - +1.3
2,410,566 - +1.3
2,410,624 + +0.9
2,410,632 - -1.5
2,410,637 - -1.7
2,410,794 - Shewana3_2019 0.15 +1.3
2,410,799 + Shewana3_2019 0.15 +0.0
2,410,816 + Shewana3_2019 0.16 +1.3
2,410,817 - Shewana3_2019 0.16 +0.3
2,410,830 + Shewana3_2019 0.16 +1.3
2,410,838 - Shewana3_2019 0.17 -1.0
2,410,859 + Shewana3_2019 0.18 -0.3
2,410,859 + Shewana3_2019 0.18 -0.1
2,410,867 - Shewana3_2019 0.18 -1.8
2,410,867 - Shewana3_2019 0.18 -0.7
2,410,894 + Shewana3_2019 0.19 +0.3
2,410,894 + Shewana3_2019 0.19 -0.3
2,410,904 + Shewana3_2019 0.19 +0.3
2,410,945 + Shewana3_2019 0.21 -0.7
2,411,049 - Shewana3_2019 0.25 +0.3
2,411,156 + Shewana3_2019 0.29 -0.3
2,411,236 + Shewana3_2019 0.32 -0.3
2,411,244 - Shewana3_2019 0.33 -0.1
2,411,245 + Shewana3_2019 0.33 -0.7
2,411,255 + Shewana3_2019 0.33 -1.3
2,411,263 - Shewana3_2019 0.34 +0.0
2,411,288 + +1.3
2,411,288 + Shewana3_2019 0.35 +0.3
2,411,300 + Shewana3_2019 0.35 +0.7
2,411,306 - Shewana3_2019 0.35 -0.3
2,411,330 + Shewana3_2019 0.36 +0.2
2,411,371 + Shewana3_2019 0.38 +1.5
2,411,371 + Shewana3_2019 0.38 -0.7
2,411,371 + Shewana3_2019 0.38 -0.3
2,411,371 + Shewana3_2019 0.38 -1.0
2,411,376 + Shewana3_2019 0.38 -0.3
2,411,384 - Shewana3_2019 0.38 -1.3
2,411,384 - Shewana3_2019 0.38 +0.3
2,411,409 - Shewana3_2019 0.39 -0.5

Or see this region's nucleotide sequence