Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1794

Experiment: nitrite 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 15 mM
2,121,861	+		Shewana3_1793	0.51	-1.0
2,122,028	+		Shewana3_1793	0.69	+0.3
2,122,036	-		Shewana3_1793	0.70	+0.0
2,122,036	-		Shewana3_1793	0.70	-1.1
2,122,068	+		Shewana3_1793	0.74	-0.5
2,122,095	+		Shewana3_1793	0.77	+1.3
2,122,113	+		Shewana3_1793	0.79	-1.5
2,122,113	+		Shewana3_1793	0.79	-1.2
2,122,121	-		Shewana3_1793	0.80	-0.2
2,122,144	+		Shewana3_1793	0.82	-0.2
2,122,161	+		Shewana3_1793	0.84	+1.3
2,122,162	-		Shewana3_1793	0.84	+0.6
2,122,216	-				+1.1
2,122,275	-				+0.3
2,122,275	-				-1.8
2,122,276	-				-0.5
2,122,494	+				+0.0
2,122,510	-				-1.2
2,122,569	+				+0.0
2,122,589	-				+1.3
2,122,657	-				+0.6
2,122,749	+				-0.0
2,122,757	-				+0.8
2,122,758	-				-0.2
2,122,763	-				+0.3
2,122,773	+				-0.5
2,122,773	+				+0.3
2,122,781	-				+1.3
2,122,809	+				-0.2
2,122,809	+				+1.3
2,122,809	+				-1.7
2,122,817	-				+0.3
2,122,817	-				+1.3
2,122,817	-				+0.3
2,122,907	+				-0.7
2,122,915	+				-0.5
2,122,915	-				+0.3
2,122,954	+				+0.3
2,122,954	+				+0.2
2,122,962	-				+1.3
2,122,962	-				+0.8
2,122,963	-				-0.7
2,122,974	+				+1.3
2,122,987	-				-1.0
2,122,987	-				+1.3
2,122,994	+		Shewana3_1794	0.10	-1.0
2,122,994	+		Shewana3_1794	0.10	-1.8
2,122,997	-		Shewana3_1794	0.10	-1.2
2,123,002	-		Shewana3_1794	0.11	-1.8
2,123,008	+		Shewana3_1794	0.11	-0.7
2,123,008	+		Shewana3_1794	0.11	+1.3
2,123,008	+		Shewana3_1794	0.11	-0.2
2,123,008	+		Shewana3_1794	0.11	-0.4
2,123,016	-		Shewana3_1794	0.12	+1.1
2,123,016	-		Shewana3_1794	0.12	-0.7
2,123,016	-		Shewana3_1794	0.12	-1.0
2,123,016	-		Shewana3_1794	0.12	+1.3
2,123,016	-				+0.3
2,123,016	-		Shewana3_1794	0.12	-0.7
2,123,016	-		Shewana3_1794	0.12	+0.3
2,123,028	-		Shewana3_1794	0.12	-0.8
2,123,057	-		Shewana3_1794	0.14	-1.3
2,123,057	-		Shewana3_1794	0.14	-1.1
2,123,059	+		Shewana3_1794	0.14	+1.3
2,123,067	-		Shewana3_1794	0.15	-0.4
2,123,132	+		Shewana3_1794	0.19	+1.3
2,123,133	+		Shewana3_1794	0.20	+1.9
2,123,133	+		Shewana3_1794	0.20	-1.0
2,123,133	+		Shewana3_1794	0.20	+0.0
2,123,133	+		Shewana3_1794	0.20	-0.7
2,123,133	+		Shewana3_1794	0.20	+1.3
2,123,133	+		Shewana3_1794	0.20	+0.3
2,123,133	+		Shewana3_1794	0.20	+2.3
2,123,139	-		Shewana3_1794	0.20	-1.4
2,123,140	-		Shewana3_1794	0.20	+0.5
2,123,140	-		Shewana3_1794	0.20	+1.0
2,123,141	-		Shewana3_1794	0.20	+0.3
2,123,141	-		Shewana3_1794	0.20	-1.0
2,123,141	-		Shewana3_1794	0.20	-1.2
2,123,141	-		Shewana3_1794	0.20	-1.0
2,123,141	-		Shewana3_1794	0.20	-1.2
2,123,141	-		Shewana3_1794	0.20	-1.0
2,123,141	-		Shewana3_1794	0.20	-0.2
2,123,228	+		Shewana3_1794	0.26	+0.3
2,123,229	+		Shewana3_1794	0.26	+1.3
2,123,230	-		Shewana3_1794	0.26	-0.8
2,123,230	-		Shewana3_1794	0.26	+2.7
2,123,236	-		Shewana3_1794	0.27	-1.2
2,123,299	+		Shewana3_1794	0.31	+1.3
2,123,301	+		Shewana3_1794	0.31	+0.4
2,123,309	-		Shewana3_1794	0.31	-0.2
2,123,309	-		Shewana3_1794	0.31	-1.0
2,123,309	-		Shewana3_1794	0.31	+0.3
2,123,383	+		Shewana3_1794	0.37	-0.2
2,123,475	+		Shewana3_1794	0.43	-0.7
2,123,499	-		Shewana3_1794	0.44	+0.3
2,123,522	+		Shewana3_1794	0.46	-0.7
2,123,522	+		Shewana3_1794	0.46	+0.8
2,123,530	-		Shewana3_1794	0.47	-0.2
2,123,537	+		Shewana3_1794	0.47	+1.3
2,123,545	-		Shewana3_1794	0.48	+0.3
2,123,551	+		Shewana3_1794	0.48	-0.2
2,123,556	+		Shewana3_1794	0.48	-0.7
2,123,563	+		Shewana3_1794	0.49	-0.7
2,123,563	+		Shewana3_1794	0.49	+0.3
2,123,563	+		Shewana3_1794	0.49	-1.0
2,123,571	-		Shewana3_1794	0.49	+1.3
2,123,571	-		Shewana3_1794	0.49	+0.3
2,123,576	-		Shewana3_1794	0.50	-0.6
2,123,598	+		Shewana3_1794	0.51	-0.2
2,123,598	+		Shewana3_1794	0.51	+1.9
2,123,598	+		Shewana3_1794	0.51	-0.2
2,123,598	+		Shewana3_1794	0.51	-0.7
2,123,598	+		Shewana3_1794	0.51	-1.1
2,123,598	+		Shewana3_1794	0.51	-1.2
2,123,598	+		Shewana3_1794	0.51	+0.8
2,123,608	+		Shewana3_1794	0.52	-2.0
2,123,654	-		Shewana3_1794	0.55	-0.2
2,123,729	+		Shewana3_1794	0.60	+1.3
2,123,737	-		Shewana3_1794	0.61	-2.0
2,123,751	-		Shewana3_1794	0.62	+1.3
2,123,860	+		Shewana3_1794	0.69	-0.1
2,123,876	+		Shewana3_1794	0.70	-1.0
2,123,876	-		Shewana3_1794	0.70	+0.3
2,123,891	+		Shewana3_1794	0.71	-0.8
2,123,891	+		Shewana3_1794	0.71	-2.0
2,123,909	+		Shewana3_1794	0.72	-0.7
2,123,919	+		Shewana3_1794	0.73	+1.3
2,123,926	+		Shewana3_1794	0.73	-0.7
2,123,934	-		Shewana3_1794	0.74	-1.2
2,123,934	-		Shewana3_1794	0.74	+0.3
2,123,934	-		Shewana3_1794	0.74	+1.6
2,123,989	+		Shewana3_1794	0.78	-0.2
2,123,990	+		Shewana3_1794	0.78	-0.8
2,123,997	-		Shewana3_1794	0.78	-0.7
2,124,045	+		Shewana3_1794	0.82	-1.0
2,124,065	+		Shewana3_1794	0.83	-0.2
2,124,065	+		Shewana3_1794	0.83	-0.2
2,124,065	+		Shewana3_1794	0.83	+1.3
2,124,065	+		Shewana3_1794	0.83	-0.7
2,124,065	+		Shewana3_1794	0.83	+0.3
2,124,065	+		Shewana3_1794	0.83	+1.1
2,124,065	+		Shewana3_1794	0.83	+1.3
2,124,065	+		Shewana3_1794	0.83	+0.3
2,124,065	+		Shewana3_1794	0.83	-0.1
2,124,065	+		Shewana3_1794	0.83	+0.3
2,124,065	+		Shewana3_1794	0.83	-0.2
2,124,065	+		Shewana3_1794	0.83	+1.3
2,124,065	+		Shewana3_1794	0.83	+0.3
2,124,070	+		Shewana3_1794	0.83	-0.7
2,124,073	-		Shewana3_1794	0.83	+0.3
2,124,073	-		Shewana3_1794	0.83	+0.0
2,124,073	-		Shewana3_1794	0.83	+0.3
2,124,073	-		Shewana3_1794	0.83	+1.3
2,124,073	-		Shewana3_1794	0.83	-2.5
2,124,073	-		Shewana3_1794	0.83	+0.8
2,124,083	+		Shewana3_1794	0.84	+1.3
2,124,084	+		Shewana3_1794	0.84	+1.3
2,124,084	+		Shewana3_1794	0.84	-0.7
2,124,090	+		Shewana3_1794	0.85	+0.8
2,124,092	-		Shewana3_1794	0.85	-1.8
2,124,126	+		Shewana3_1794	0.87	+0.3
2,124,134	-		Shewana3_1794	0.88	-1.0
2,124,194	+				+0.3
2,124,194	+				+1.3
2,124,194	+				+0.3
2,124,202	-				-0.7
2,124,232	+				-0.1
2,124,236	+				-2.1
2,124,240	-				+0.3
2,124,240	-				+1.3
2,124,269	+				+0.6
2,124,270	+				-0.4
2,124,278	+				+0.3
2,124,278	-				-0.4
2,124,306	+				-1.5
2,124,308	+				-0.2
2,124,309	+				+0.2
2,124,309	+				+0.3
2,124,314	+				+2.6
2,124,314	-				+1.3
2,124,317	-				-0.2
2,124,317	-				+0.6
2,124,332	-				-0.2
2,124,334	+				-0.1
2,124,382	+				+0.4
2,124,382	+				+0.1
2,124,386	-				-0.2
2,124,442	+				+0.9
2,124,479	+				+0.5
2,124,487	-				+1.3
2,124,488	-				+0.6
2,124,538	+				+0.4
2,124,538	+				+0.5
2,124,538	+				+0.8
2,124,540	-				-0.7
2,124,562	+				+0.7
2,124,596	+				+0.9
2,124,596	+				-0.4
2,124,598	+				-0.8
2,124,598	+				-0.1
2,124,604	-				-0.2
2,124,604	-				+0.3
2,124,608	+				+0.1
2,124,613	+				-0.2
2,124,613	+				+0.0
2,124,613	+				+0.0
2,124,613	+				+0.3
2,124,613	+				-1.0
2,124,613	+				-0.2
2,124,621	-				-0.7
2,124,621	-				+1.3
2,124,673	-				+0.3
2,124,686	+				-0.7
2,124,717	+		Shewana3_1795	0.13	+0.4
2,124,747	+		Shewana3_1795	0.17	+1.3
2,124,747	+		Shewana3_1795	0.17	-0.1
2,124,747	+		Shewana3_1795	0.17	-0.2
2,124,755	-		Shewana3_1795	0.18	+1.1
2,124,755	-		Shewana3_1795	0.18	+0.3
2,124,755	-		Shewana3_1795	0.18	-1.0
2,124,757	+		Shewana3_1795	0.19	+1.3
2,124,817	+		Shewana3_1795	0.28	+1.3
2,124,827	+		Shewana3_1795	0.29	+2.9
2,124,827	+		Shewana3_1795	0.29	-0.5
2,124,832	+		Shewana3_1795	0.30	-1.0
2,124,835	+		Shewana3_1795	0.30	-0.2
2,124,835	-		Shewana3_1795	0.30	-0.7
2,124,840	+		Shewana3_1795	0.31	+1.3
2,124,840	+		Shewana3_1795	0.31	+0.2
2,124,848	-		Shewana3_1795	0.32	-0.7
2,124,863	+		Shewana3_1795	0.34	+0.0
2,124,871	-		Shewana3_1795	0.36	-0.3
2,124,875	+		Shewana3_1795	0.36	-0.2
2,124,875	+		Shewana3_1795	0.36	+0.1
2,124,875	+		Shewana3_1795	0.36	-0.5
2,124,918	+		Shewana3_1795	0.42	+0.3
2,124,926	-		Shewana3_1795	0.44	+0.3
2,124,926	-		Shewana3_1795	0.44	-0.5
2,124,926	-		Shewana3_1795	0.44	+1.3
2,124,950	-		Shewana3_1795	0.47	-1.8
2,124,952	+		Shewana3_1795	0.47	-0.4
2,124,952	+		Shewana3_1795	0.47	+0.9
2,124,952	+		Shewana3_1795	0.47	+1.1
2,124,960	-		Shewana3_1795	0.49	-0.6
2,124,960	-		Shewana3_1795	0.49	-1.7
2,124,960	-		Shewana3_1795	0.49	-0.2
2,124,960	-		Shewana3_1795	0.49	+0.3
2,124,960	-		Shewana3_1795	0.49	+0.4
2,124,960	-		Shewana3_1795	0.49	-0.7
2,124,974	+		Shewana3_1795	0.51	-2.1
2,124,974	+		Shewana3_1795	0.51	-0.2
2,124,974	+		Shewana3_1795	0.51	+0.3
2,124,982	-		Shewana3_1795	0.52	-1.8
2,124,982	-		Shewana3_1795	0.52	+1.3
2,124,988	-		Shewana3_1795	0.53	+1.3
2,125,001	+		Shewana3_1795	0.55	-0.5
2,125,046	+		Shewana3_1795	0.61	+0.8
2,125,059	+		Shewana3_1795	0.63	+0.3
2,125,059	-		Shewana3_1795	0.63	-2.1
2,125,061	+		Shewana3_1795	0.64	+1.1
2,125,067	-		Shewana3_1795	0.64	-1.7
2,125,080	+		Shewana3_1795	0.66	-0.2
2,125,080	+		Shewana3_1795	0.66	-1.0
2,125,080	+		Shewana3_1795	0.66	+0.5
2,125,088	-		Shewana3_1795	0.68	+1.0
2,125,088	-		Shewana3_1795	0.68	+0.3
2,125,088	-		Shewana3_1795	0.68	-0.7
2,125,088	-		Shewana3_1795	0.68	-0.2
2,125,088	-		Shewana3_1795	0.68	+0.3
2,125,107	-		Shewana3_1795	0.70	-0.7
2,125,116	+		Shewana3_1795	0.72	-0.1
2,125,116	+		Shewana3_1795	0.72	-0.1
2,125,162	+		Shewana3_1795	0.78	+0.4
2,125,168	+		Shewana3_1795	0.79	+0.5
2,125,176	+		Shewana3_1795	0.81	+0.4
2,125,264	+				-0.2
2,125,292	+				-0.4
2,125,300	-				-0.2