Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1721 and Shewana3_1722 are separated by 116 nucleotides Shewana3_1722 and Shewana3_1723 are separated by 15 nucleotides
Shewana3_1721: Shewana3_1721 - metal dependent phosphohydrolase (RefSeq), at 2,023,995 to 2,025,257
_1721
Shewana3_1722: Shewana3_1722 - prolyl 4-hydroxylase, alpha subunit (RefSeq), at 2,025,374 to 2,026,069
_1722
Shewana3_1723: Shewana3_1723 - ATPase domain-containing protein (RefSeq), at 2,026,085 to 2,027,434
_1723
Position (kb)
2025
2026
2027 Strain fitness (log2 ratio)
-2
-1
0
1 at 2024.404 kb on - strand, within Shewana3_1721 at 2024.538 kb on - strand, within Shewana3_1721 at 2024.540 kb on + strand, within Shewana3_1721 at 2024.657 kb on + strand, within Shewana3_1721 at 2024.753 kb on - strand, within Shewana3_1721 at 2024.755 kb on + strand, within Shewana3_1721 at 2024.832 kb on + strand, within Shewana3_1721 at 2024.857 kb on + strand, within Shewana3_1721 at 2024.932 kb on + strand, within Shewana3_1721 at 2025.560 kb on + strand, within Shewana3_1722 at 2025.614 kb on + strand, within Shewana3_1722 at 2025.873 kb on + strand, within Shewana3_1722 at 2026.333 kb on - strand, within Shewana3_1723 at 2026.338 kb on - strand, within Shewana3_1723 at 2026.538 kb on + strand, within Shewana3_1723 at 2026.875 kb on + strand, within Shewana3_1723 at 2027.063 kb on + strand, within Shewana3_1723
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 2,024,404 - Shewana3_1721 0.32 -0.1 2,024,538 - Shewana3_1721 0.43 +1.0 2,024,540 + Shewana3_1721 0.43 -0.2 2,024,657 + Shewana3_1721 0.52 +1.3 2,024,753 - Shewana3_1721 0.60 +0.8 2,024,755 + Shewana3_1721 0.60 -2.0 2,024,832 + Shewana3_1721 0.66 -1.7 2,024,857 + Shewana3_1721 0.68 +0.9 2,024,932 + Shewana3_1721 0.74 +0.3 2,025,560 + Shewana3_1722 0.27 +0.8 2,025,614 + Shewana3_1722 0.34 -1.0 2,025,873 + Shewana3_1722 0.72 +0.3 2,026,333 - Shewana3_1723 0.18 -0.2 2,026,338 - Shewana3_1723 0.19 -2.6 2,026,538 + Shewana3_1723 0.34 -1.2 2,026,875 + Shewana3_1723 0.59 +0.3 2,027,063 + Shewana3_1723 0.72 +0.4
Or see this region's nucleotide sequence