Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1619

Experiment: nitrite 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 15 mM
1,903,378	-				+1.4
1,903,387	+				-0.2
1,903,395	-				-0.6
1,903,432	-				-0.1
1,903,432	-				+0.4
1,903,496	-				+0.4
1,903,501	-				-0.2
1,903,679	-				+1.4
1,903,778	-		Shewana3_1618	0.10	+1.4
1,903,804	+		Shewana3_1618	0.14	-1.8
1,903,907	+		Shewana3_1618	0.31	+0.6
1,903,909	-		Shewana3_1618	0.31	-0.9
1,903,937	+		Shewana3_1618	0.35	+0.4
1,903,945	-		Shewana3_1618	0.37	+0.4
1,903,963	+		Shewana3_1618	0.39	-0.9
1,903,971	-		Shewana3_1618	0.41	-0.9
1,903,999	+		Shewana3_1618	0.45	-0.3
1,904,007	-		Shewana3_1618	0.46	-0.3
1,904,325	+				+1.6
1,904,547	-				-0.9
1,904,547	-				-0.6
1,904,608	+				+0.1
1,904,611	-				+1.4
1,904,616	-				-0.2
1,904,616	-				+1.4
1,904,743	+		Shewana3_1619	0.13	-1.6
1,904,751	-		Shewana3_1619	0.14	-0.2
1,904,926	-		Shewana3_1619	0.20	-0.9
1,905,050	-		Shewana3_1619	0.24	+0.8
1,905,057	+		Shewana3_1619	0.25	+0.9
1,905,220	-		Shewana3_1619	0.30	-0.6
1,905,234	+		Shewana3_1619	0.31	+0.4
1,905,250	-		Shewana3_1619	0.31	+0.8
1,905,300	-		Shewana3_1619	0.33	+1.4
1,905,347	+		Shewana3_1619	0.35	+1.4
1,905,355	+		Shewana3_1619	0.35	-0.4
1,905,357	+		Shewana3_1619	0.35	-0.1
1,905,357	+		Shewana3_1619	0.35	+1.4
1,905,564	-		Shewana3_1619	0.43	+1.4
1,905,564	-		Shewana3_1619	0.43	+0.4
1,905,580	-		Shewana3_1619	0.43	+0.4
1,905,584	-		Shewana3_1619	0.43	+1.4
1,905,682	+		Shewana3_1619	0.47	+1.4
1,905,685	-		Shewana3_1619	0.47	+1.4
1,905,713	-		Shewana3_1619	0.48	+0.1
1,905,733	+		Shewana3_1619	0.49	-0.4
1,905,818	-		Shewana3_1619	0.52	-0.2
1,905,820	+		Shewana3_1619	0.52	-0.6
1,905,820	+		Shewana3_1619	0.52	+0.4
1,905,828	-		Shewana3_1619	0.52	-0.2
1,905,876	-		Shewana3_1619	0.54	+1.4
1,905,939	-		Shewana3_1619	0.56	-0.2
1,905,949	+		Shewana3_1619	0.56	-0.2
1,905,957	+		Shewana3_1619	0.56	-0.2
1,905,973	-		Shewana3_1619	0.57	-1.3
1,905,978	+		Shewana3_1619	0.57	+1.4
1,905,986	-		Shewana3_1619	0.57	+1.4
1,906,049	+		Shewana3_1619	0.60	-0.2
1,906,060	+		Shewana3_1619	0.60	+0.4
1,906,066	+		Shewana3_1619	0.60	+0.9
1,906,077	+		Shewana3_1619	0.61	+0.4
1,906,083	-		Shewana3_1619	0.61	-0.4
1,906,191	+		Shewana3_1619	0.65	-0.2
1,906,201	+		Shewana3_1619	0.65	+0.1
1,906,201	+		Shewana3_1619	0.65	+0.4
1,906,201	+		Shewana3_1619	0.65	-0.8
1,906,201	+		Shewana3_1619	0.65	+3.0
1,906,201	+		Shewana3_1619	0.65	-1.2
1,906,201	+		Shewana3_1619	0.65	-0.6
1,906,209	-		Shewana3_1619	0.65	+0.4
1,906,209	-				-0.2
1,906,209	-		Shewana3_1619	0.65	+1.4
1,906,209	-		Shewana3_1619	0.65	-0.2
1,906,209	-		Shewana3_1619	0.65	+0.8
1,906,256	-		Shewana3_1619	0.67	-0.6
1,906,377	+		Shewana3_1619	0.71	+0.4
1,906,386	+		Shewana3_1619	0.72	+0.8
1,906,397	+		Shewana3_1619	0.72	+0.4
1,906,403	+		Shewana3_1619	0.72	+0.4
1,906,403	+		Shewana3_1619	0.72	+0.1
1,906,403	+		Shewana3_1619	0.72	-0.6
1,906,410	+		Shewana3_1619	0.72	+0.1
1,906,411	-		Shewana3_1619	0.73	-0.2
1,906,411	-		Shewana3_1619	0.73	-1.4
1,906,411	-		Shewana3_1619	0.73	-0.2
1,906,411	-		Shewana3_1619	0.73	-1.6
1,906,524	+		Shewana3_1619	0.77	+1.4
1,906,532	-		Shewana3_1619	0.77	+0.4
1,906,532	-		Shewana3_1619	0.77	+0.4
1,906,575	+		Shewana3_1619	0.78	-1.6
1,906,596	+		Shewana3_1619	0.79	-0.0
1,906,637	+		Shewana3_1619	0.81	+0.1
1,906,645	-		Shewana3_1619	0.81	-0.6
1,906,742	+		Shewana3_1619	0.84	+0.4
1,906,750	-		Shewana3_1619	0.85	+0.4
1,906,753	+		Shewana3_1619	0.85	+0.9
1,906,762	+		Shewana3_1619	0.85	+0.5
1,906,764	+		Shewana3_1619	0.85	+1.1
1,906,772	-		Shewana3_1619	0.85	-0.6
1,906,773	+		Shewana3_1619	0.85	+0.4
1,906,805	-		Shewana3_1619	0.86	+0.4
1,906,847	+		Shewana3_1619	0.88	-0.6
1,906,862	+		Shewana3_1619	0.88	+0.2
1,906,869	-		Shewana3_1619	0.89	+1.4
1,906,896	+		Shewana3_1619	0.90	-0.3
1,906,896	+		Shewana3_1619	0.90	+0.3
1,906,911	+				-1.7
1,906,911	+				-0.9
1,906,911	+				-1.8
1,906,911	+				+0.3
1,906,911	+				-0.9
1,906,918	+				-0.9
1,906,918	+				-0.9
1,906,918	+				+0.1
1,906,926	-				-0.2
1,906,935	+				-0.2
1,906,948	+				+1.0
1,906,958	+				-0.5
1,906,982	+				-0.4
1,907,005	+				+1.4
1,907,012	+				+0.1
1,907,012	+				-1.2
1,907,012	+				-0.4
1,907,081	+				-0.9
1,907,108	+				+0.1
1,907,212	+				-0.0
1,907,325	+				-1.2
1,907,333	-				+0.6
1,907,351	+				+1.7
1,907,359	-				+0.2
1,907,452	+		Shewana3_1620	0.16	-0.9
1,907,457	+		Shewana3_1620	0.16	-1.2
1,907,457	+		Shewana3_1620	0.16	+0.2
1,907,460	-		Shewana3_1620	0.17	-1.1
1,907,465	-		Shewana3_1620	0.17	+0.8
1,907,465	-		Shewana3_1620	0.17	+0.6
1,907,473	-		Shewana3_1620	0.18	+0.4
1,907,491	+		Shewana3_1620	0.20	+1.6
1,907,526	+		Shewana3_1620	0.24	+1.4
1,907,526	+		Shewana3_1620	0.24	+0.1
1,907,544	+		Shewana3_1620	0.26	-0.5
1,907,552	-		Shewana3_1620	0.27	-0.9
1,907,587	+		Shewana3_1620	0.31	+2.4
1,907,648	-		Shewana3_1620	0.37	-1.2
1,907,667	+		Shewana3_1620	0.39	-1.0
1,907,760	+		Shewana3_1620	0.50	+1.4
1,907,823	-		Shewana3_1620	0.57	-1.6
1,907,847	+		Shewana3_1620	0.59	+0.9
1,908,060	+		Shewana3_1620	0.83	+1.6
1,908,065	+		Shewana3_1620	0.83	+0.1