Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1613

Experiment: nitrite 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 15 mM
1,895,916	-		Shewana3_1612	0.59	-0.6
1,895,985	+		Shewana3_1612	0.63	-1.9
1,896,038	+		Shewana3_1612	0.66	+1.4
1,896,044	+		Shewana3_1612	0.66	+0.2
1,896,044	+		Shewana3_1612	0.66	+2.4
1,896,046	+		Shewana3_1612	0.66	-0.6
1,896,069	-		Shewana3_1612	0.67	-1.8
1,896,207	+		Shewana3_1612	0.75	-0.6
1,896,209	+		Shewana3_1612	0.75	+0.4
1,896,217	-		Shewana3_1612	0.75	+1.4
1,896,443	+		Shewana3_1612	0.87	+3.0
1,896,443	+		Shewana3_1612	0.87	+0.4
1,896,443	+		Shewana3_1612	0.87	+1.4
1,896,456	+		Shewana3_1612	0.88	-0.9
1,896,504	+				+2.0
1,896,598	+				-0.6
1,896,605	+				+0.3
1,896,606	-				-0.2
1,896,719	+				-0.5
1,896,801	-				-1.9
1,896,851	-				-0.6
1,897,235	+		Shewana3_1613	0.25	-0.3
1,897,240	+		Shewana3_1613	0.25	-1.2
1,897,240	+		Shewana3_1613	0.25	-1.1
1,897,240	+		Shewana3_1613	0.25	-0.6
1,897,245	+		Shewana3_1613	0.26	-0.2
1,897,248	+		Shewana3_1613	0.26	-0.6
1,897,248	+		Shewana3_1613	0.26	-0.2
1,897,362	+		Shewana3_1613	0.31	-0.7
1,897,398	+		Shewana3_1613	0.33	-1.9
1,897,398	+		Shewana3_1613	0.33	-0.2
1,897,412	+		Shewana3_1613	0.34	+0.3
1,897,412	-		Shewana3_1613	0.34	-0.6
1,897,427	+		Shewana3_1613	0.35	+3.4
1,897,427	-		Shewana3_1613	0.35	-0.2
1,897,437	+		Shewana3_1613	0.35	-0.9
1,897,549	+		Shewana3_1613	0.41	+0.0
1,897,549	+		Shewana3_1613	0.41	-1.5
1,897,549	+		Shewana3_1613	0.41	-0.5
1,897,549	+		Shewana3_1613	0.41	-0.2
1,897,549	+		Shewana3_1613	0.41	-0.2
1,897,549	+		Shewana3_1613	0.41	+0.1
1,897,555	+		Shewana3_1613	0.41	-0.2
1,897,556	+		Shewana3_1613	0.41	-0.8
1,897,557	-		Shewana3_1613	0.41	+0.4
1,897,557	-		Shewana3_1613	0.41	-0.6
1,897,557	-		Shewana3_1613	0.41	+1.4
1,897,557	-		Shewana3_1613	0.41	-0.2
1,897,561	+		Shewana3_1613	0.42	-1.2
1,897,561	+		Shewana3_1613	0.42	+1.2
1,897,561	+		Shewana3_1613	0.42	+0.4
1,897,564	-		Shewana3_1613	0.42	-0.2
1,897,564	-		Shewana3_1613	0.42	-0.2
1,897,564	-		Shewana3_1613	0.42	-1.0
1,897,596	+		Shewana3_1613	0.43	+0.7
1,897,602	+		Shewana3_1613	0.44	-1.6
1,897,602	+		Shewana3_1613	0.44	-0.1
1,897,610	-		Shewana3_1613	0.44	+1.4
1,897,610	-		Shewana3_1613	0.44	-0.6
1,897,610	-		Shewana3_1613	0.44	+1.4
1,897,620	-		Shewana3_1613	0.44	-0.2
1,897,622	-		Shewana3_1613	0.45	-0.2
1,897,679	-		Shewana3_1613	0.47	+0.6
1,897,679	-		Shewana3_1613	0.47	-0.6
1,897,706	+		Shewana3_1613	0.49	-0.3
1,897,706	+		Shewana3_1613	0.49	+1.0
1,897,706	+		Shewana3_1613	0.49	+0.7
1,897,706	+		Shewana3_1613	0.49	-0.0
1,897,706	+		Shewana3_1613	0.49	-0.0
1,897,706	+		Shewana3_1613	0.49	+0.2
1,897,706	+		Shewana3_1613	0.49	+0.1
1,897,714	-				+1.4
1,897,714	-		Shewana3_1613	0.49	-0.2
1,897,714	-		Shewana3_1613	0.49	-0.9
1,897,714	-		Shewana3_1613	0.49	+0.4
1,897,716	+		Shewana3_1613	0.49	+0.2
1,897,716	+		Shewana3_1613	0.49	+0.4
1,897,724	-		Shewana3_1613	0.50	+1.4
1,897,761	-		Shewana3_1613	0.52	+0.4
1,897,762	+		Shewana3_1613	0.52	-0.0
1,897,782	+		Shewana3_1613	0.53	-0.5
1,897,835	-		Shewana3_1613	0.55	-0.2
1,897,835	-		Shewana3_1613	0.55	+0.4
1,897,864	+		Shewana3_1613	0.57	-1.4
1,897,872	-		Shewana3_1613	0.57	-0.9
1,897,872	-		Shewana3_1613	0.57	-0.9
1,897,881	+		Shewana3_1613	0.58	-1.2
1,897,881	+		Shewana3_1613	0.58	+0.4
1,897,886	+		Shewana3_1613	0.58	+0.2
1,897,891	+		Shewana3_1613	0.58	+0.6
1,897,921	-		Shewana3_1613	0.60	+1.4
1,897,936	+		Shewana3_1613	0.60	-1.4
1,897,944	-		Shewana3_1613	0.61	-0.6
1,897,944	-		Shewana3_1613	0.61	+0.4
1,898,031	+		Shewana3_1613	0.65	-0.4
1,898,031	+		Shewana3_1613	0.65	+0.1
1,898,031	+		Shewana3_1613	0.65	-0.2
1,898,031	+		Shewana3_1613	0.65	+0.3
1,898,039	-		Shewana3_1613	0.66	-0.5
1,898,042	+		Shewana3_1613	0.66	+0.7
1,898,048	+		Shewana3_1613	0.66	-1.6
1,898,049	-		Shewana3_1613	0.66	+0.4
1,898,050	-		Shewana3_1613	0.66	-1.2
1,898,053	+		Shewana3_1613	0.66	+0.0
1,898,056	-		Shewana3_1613	0.66	-0.6
1,898,056	-		Shewana3_1613	0.66	+1.4
1,898,056	-		Shewana3_1613	0.66	-0.9
1,898,122	+		Shewana3_1613	0.70	-1.2
1,898,143	+		Shewana3_1613	0.71	-0.6
1,898,143	+		Shewana3_1613	0.71	-0.2
1,898,143	+		Shewana3_1613	0.71	-1.1
1,898,146	-		Shewana3_1613	0.71	-0.2
1,898,151	+		Shewana3_1613	0.71	-0.4
1,898,151	-		Shewana3_1613	0.71	-1.4
1,898,151	-		Shewana3_1613	0.71	-0.9
1,898,151	-		Shewana3_1613	0.71	+0.4
1,898,154	+		Shewana3_1613	0.71	-0.3
1,898,204	-		Shewana3_1613	0.74	+0.4
1,898,438	+		Shewana3_1613	0.86	-1.2
1,898,446	-		Shewana3_1613	0.86	+0.4
1,898,455	+		Shewana3_1613	0.87	+1.4
1,898,537	+				-0.1
1,898,537	+				-0.3
1,898,574	+				+0.8
1,898,635	+				-0.4
1,898,635	+				+0.9
1,898,635	+				-1.3
1,898,635	+				-0.9
1,898,635	+				-0.7
1,898,643	-				-0.6
1,898,643	-				-0.6
1,898,643	-				+0.4
1,898,670	-				-0.6
1,898,798	+				+0.1
1,898,808	+				-0.5
1,898,832	+				-0.4
1,898,832	+				+0.4
1,898,850	-				+0.4
1,898,863	+				+0.4
1,898,875	+				-0.6
1,898,901	+				+1.4
1,898,943	+				+2.4
1,898,950	-				+1.4
1,898,951	-				+0.4
1,898,952	-				-0.4
1,898,988	-				-0.8
1,899,065	-				-1.4
1,899,149	-				+0.0
1,899,196	+				+1.4
1,899,204	-				-1.2
1,899,291	+		Shewana3_1614	0.11	+0.4
1,899,292	-		Shewana3_1614	0.11	+1.4
1,899,448	+		Shewana3_1614	0.53	+0.3
1,899,503	-		Shewana3_1614	0.67	-0.2
1,899,568	+		Shewana3_1614	0.85	+0.1
1,899,710	+				+1.3
1,899,710	+				+0.0