Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1301

Experiment: nitrite 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 15 mM
1,513,136	+		Shewana3_1299	0.86	+0.2
1,513,338	-				+0.4
1,513,340	+				-0.3
1,513,660	-		Shewana3_1300	0.42	-0.5
1,513,747	+		Shewana3_1300	0.60	+0.5
1,513,859	-		Shewana3_1300	0.84	+0.2
1,513,919	+				+0.1
1,513,919	+				-0.4
1,513,927	-				-0.5
1,513,976	+				+0.3
1,513,992	-				-0.2
1,514,267	+				-0.2
1,514,267	+				+0.4
1,514,267	+				-1.7
1,514,275	-				-0.1
1,514,275	-				-0.7
1,514,275	-				-0.1
1,514,275	-				+0.7
1,514,275	-				-0.0
1,514,305	-		Shewana3_1301	0.11	-0.2
1,514,396	-		Shewana3_1301	0.14	+0.3
1,514,415	-		Shewana3_1301	0.15	+0.1
1,514,416	+		Shewana3_1301	0.15	+0.4
1,514,424	+		Shewana3_1301	0.15	-1.6
1,514,430	+		Shewana3_1301	0.16	-1.2
1,514,436	+		Shewana3_1301	0.16	-0.2
1,514,438	-		Shewana3_1301	0.16	+0.8
1,514,444	-		Shewana3_1301	0.16	+0.8
1,514,458	+		Shewana3_1301	0.17	-2.0
1,514,461	-		Shewana3_1301	0.17	-1.6
1,514,461	-		Shewana3_1301	0.17	-0.2
1,514,486	+		Shewana3_1301	0.18	-0.5
1,514,493	+		Shewana3_1301	0.18	-0.2
1,514,524	+		Shewana3_1301	0.19	-0.6
1,514,524	+		Shewana3_1301	0.19	-1.6
1,514,524	+		Shewana3_1301	0.19	-0.2
1,514,524	+		Shewana3_1301	0.19	-1.2
1,514,524	+		Shewana3_1301	0.19	-1.6
1,514,525	+		Shewana3_1301	0.19	-1.2
1,514,532	-		Shewana3_1301	0.20	-0.3
1,514,532	-		Shewana3_1301	0.20	-0.4
1,514,553	+		Shewana3_1301	0.21	-0.4
1,514,553	+		Shewana3_1301	0.21	-0.0
1,514,553	+		Shewana3_1301	0.21	-2.0
1,514,555	+		Shewana3_1301	0.21	-0.2
1,514,563	+		Shewana3_1301	0.21	+0.4
1,514,606	+		Shewana3_1301	0.23	-0.3
1,514,606	+		Shewana3_1301	0.23	-0.9
1,514,614	-		Shewana3_1301	0.23	-0.6
1,514,620	+		Shewana3_1301	0.23	-1.1
1,514,620	+		Shewana3_1301	0.23	-1.9
1,514,620	+		Shewana3_1301	0.23	-1.7
1,514,628	-		Shewana3_1301	0.24	-0.8
1,514,628	-		Shewana3_1301	0.24	+0.3
1,514,628	-		Shewana3_1301	0.24	+0.4
1,514,628	-		Shewana3_1301	0.24	+0.4
1,514,628	-				+0.4
1,514,628	-		Shewana3_1301	0.24	-0.2
1,514,630	-		Shewana3_1301	0.24	-0.6
1,514,634	+		Shewana3_1301	0.24	-0.6
1,514,635	+		Shewana3_1301	0.24	-0.2
1,514,642	-		Shewana3_1301	0.24	-1.8
1,514,643	-		Shewana3_1301	0.24	+1.4
1,514,643	-		Shewana3_1301	0.24	-1.4
1,514,643	-		Shewana3_1301	0.24	-0.9
1,514,643	-		Shewana3_1301	0.24	-0.3
1,514,643	-		Shewana3_1301	0.24	+1.4
1,514,648	-		Shewana3_1301	0.24	+0.4
1,514,654	+		Shewana3_1301	0.25	-0.2
1,514,655	+		Shewana3_1301	0.25	-0.2
1,514,662	-		Shewana3_1301	0.25	-2.7
1,514,663	-		Shewana3_1301	0.25	-1.6
1,514,673	-		Shewana3_1301	0.25	-0.6
1,514,677	-		Shewana3_1301	0.26	-1.9
1,514,724	+		Shewana3_1301	0.28	-1.6
1,514,732	-		Shewana3_1301	0.28	-0.6
1,514,794	-		Shewana3_1301	0.30	-0.9
1,514,799	-		Shewana3_1301	0.31	-0.1
1,514,802	-		Shewana3_1301	0.31	-1.6
1,514,804	+				+1.4
1,514,806	+		Shewana3_1301	0.31	+0.4
1,514,829	+		Shewana3_1301	0.32	-2.2
1,514,851	+		Shewana3_1301	0.33	-0.6
1,514,851	+		Shewana3_1301	0.33	-0.2
1,514,878	-		Shewana3_1301	0.34	+0.4
1,514,938	-		Shewana3_1301	0.36	-0.2
1,514,948	-		Shewana3_1301	0.37	-1.7
1,514,986	+		Shewana3_1301	0.38	+0.4
1,514,994	-		Shewana3_1301	0.38	-1.2
1,514,994	-		Shewana3_1301	0.38	-1.3
1,515,131	-		Shewana3_1301	0.44	+0.4
1,515,132	+		Shewana3_1301	0.44	+1.4
1,515,139	-		Shewana3_1301	0.44	-0.9
1,515,186	-		Shewana3_1301	0.46	-1.4
1,515,205	+		Shewana3_1301	0.47	-1.2
1,515,205	+		Shewana3_1301	0.47	+0.4
1,515,213	-		Shewana3_1301	0.47	-1.2
1,515,218	-		Shewana3_1301	0.48	+0.8
1,515,244	+		Shewana3_1301	0.49	-0.4
1,515,280	+		Shewana3_1301	0.50	+1.4
1,515,328	+		Shewana3_1301	0.52	-0.6
1,515,342	-		Shewana3_1301	0.53	-0.6
1,515,351	+		Shewana3_1301	0.53	-0.2
1,515,351	+		Shewana3_1301	0.53	+0.4
1,515,383	+		Shewana3_1301	0.54	-0.2
1,515,383	+		Shewana3_1301	0.54	+0.1
1,515,391	-		Shewana3_1301	0.55	+1.4
1,515,391	-		Shewana3_1301	0.55	+0.4
1,515,391	-		Shewana3_1301	0.55	-0.2
1,515,391	-		Shewana3_1301	0.55	+0.2
1,515,415	-		Shewana3_1301	0.56	+1.4
1,515,432	+		Shewana3_1301	0.56	-0.2
1,515,435	-		Shewana3_1301	0.56	-1.7
1,515,437	+				+0.4
1,515,437	+		Shewana3_1301	0.56	+1.4
1,515,438	+		Shewana3_1301	0.56	+0.4
1,515,445	-		Shewana3_1301	0.57	-0.6
1,515,449	+		Shewana3_1301	0.57	+0.4
1,515,457	-		Shewana3_1301	0.57	-0.2
1,515,472	+		Shewana3_1301	0.58	-0.7
1,515,485	-		Shewana3_1301	0.58	+0.4
1,515,491	-		Shewana3_1301	0.59	-1.7
1,515,504	+		Shewana3_1301	0.59	+0.4
1,515,527	-		Shewana3_1301	0.60	+1.4
1,515,533	+		Shewana3_1301	0.60	-1.9
1,515,561	-		Shewana3_1301	0.61	+1.4
1,515,568	-		Shewana3_1301	0.62	+0.3
1,515,573	-		Shewana3_1301	0.62	+1.4
1,515,573	-		Shewana3_1301	0.62	-0.2
1,515,578	+		Shewana3_1301	0.62	-0.6
1,515,578	-		Shewana3_1301	0.62	-2.5
1,515,578	-		Shewana3_1301	0.62	-0.2
1,515,578	-		Shewana3_1301	0.62	-0.4
1,515,578	-		Shewana3_1301	0.62	+1.4
1,515,578	-		Shewana3_1301	0.62	-1.3
1,515,578	-		Shewana3_1301	0.62	-0.2
1,515,578	-		Shewana3_1301	0.62	-0.6
1,515,586	-		Shewana3_1301	0.62	-0.2
1,515,586	-		Shewana3_1301	0.62	-0.7
1,515,592	+		Shewana3_1301	0.63	+0.4
1,515,600	-		Shewana3_1301	0.63	+0.7
1,515,600	-		Shewana3_1301	0.63	+0.3
1,515,609	-		Shewana3_1301	0.63	+0.4
1,515,656	+		Shewana3_1301	0.65	-1.9
1,515,669	+		Shewana3_1301	0.66	+1.4
1,515,685	-		Shewana3_1301	0.66	-0.6
1,515,689	+		Shewana3_1301	0.67	-1.2
1,515,690	-		Shewana3_1301	0.67	-0.6
1,515,699	+		Shewana3_1301	0.67	-0.6
1,515,699	-		Shewana3_1301	0.67	-0.2
1,515,708	+		Shewana3_1301	0.67	+1.4
1,515,729	+		Shewana3_1301	0.68	+0.9
1,515,736	+		Shewana3_1301	0.68	-0.2
1,515,736	+		Shewana3_1301	0.68	-0.9
1,515,736	+		Shewana3_1301	0.68	-0.6
1,515,742	-		Shewana3_1301	0.69	-0.2
1,515,749	-		Shewana3_1301	0.69	+0.2
1,515,749	-		Shewana3_1301	0.69	+0.4
1,515,754	-		Shewana3_1301	0.69	-1.7
1,515,767	+		Shewana3_1301	0.70	-0.6
1,515,767	+		Shewana3_1301	0.70	+1.4
1,515,767	+		Shewana3_1301	0.70	-0.9
1,515,767	+		Shewana3_1301	0.70	+0.4
1,515,767	+		Shewana3_1301	0.70	-0.2
1,515,767	-		Shewana3_1301	0.70	-0.1
1,515,775	-		Shewana3_1301	0.70	-0.2
1,515,775	-		Shewana3_1301	0.70	-1.3
1,515,823	+		Shewana3_1301	0.72	+0.4
1,515,823	+		Shewana3_1301	0.72	+1.4
1,515,825	+		Shewana3_1301	0.72	-1.9
1,515,825	+		Shewana3_1301	0.72	+0.1
1,515,825	+		Shewana3_1301	0.72	-1.4
1,515,831	-		Shewana3_1301	0.72	-0.9
1,515,833	-		Shewana3_1301	0.72	-0.9
1,515,833	-		Shewana3_1301	0.72	+0.2
1,515,842	+		Shewana3_1301	0.73	-0.2
1,515,871	-		Shewana3_1301	0.74	+1.4
1,515,898	-		Shewana3_1301	0.75	-1.7
1,515,898	-		Shewana3_1301	0.75	-0.9
1,515,901	+		Shewana3_1301	0.75	-1.3
1,515,927	-		Shewana3_1301	0.76	-0.5
1,515,964	-		Shewana3_1301	0.78	-1.1
1,516,052	+		Shewana3_1301	0.81	-0.4
1,516,058	-		Shewana3_1301	0.82	-0.8
1,516,060	+		Shewana3_1301	0.82	-0.4
1,516,060	+		Shewana3_1301	0.82	-0.4
1,516,060	+		Shewana3_1301	0.82	-0.2
1,516,060	+		Shewana3_1301	0.82	+0.8
1,516,060	+		Shewana3_1301	0.82	-0.6
1,516,068	-		Shewana3_1301	0.82	+0.4
1,516,068	-		Shewana3_1301	0.82	+0.0
1,516,068	-		Shewana3_1301	0.82	-2.6
1,516,068	-		Shewana3_1301	0.82	-0.2
1,516,068	-		Shewana3_1301	0.82	-1.3
1,516,068	-		Shewana3_1301	0.82	-1.2
1,516,082	-		Shewana3_1301	0.82	+0.0
1,516,106	-		Shewana3_1301	0.83	+1.8
1,516,115	+				-0.2
1,516,120	+		Shewana3_1301	0.84	-1.2
1,516,123	-		Shewana3_1301	0.84	-1.4
1,516,125	+		Shewana3_1301	0.84	-1.6
1,516,125	+				+3.7
1,516,133	-		Shewana3_1301	0.85	-0.4
1,516,133	-		Shewana3_1301	0.85	-0.8
1,516,295	-				-0.1
1,516,312	+				-0.9
1,516,313	+				-2.8
1,516,313	+				-0.9
1,516,331	+				+0.7
1,516,331	+				+1.0
1,516,332	+				+1.1
1,516,333	+				-0.1
1,516,333	+				-0.2
1,516,333	+				-0.1
1,516,339	-				+0.4
1,516,339	-				-0.7
1,516,341	-				+0.1
1,516,399	+				-0.7
1,516,409	-				-0.3
1,516,434	+				-0.3
1,516,440	+				-0.6
1,516,447	-				-0.2
1,516,452	-				-0.2
1,516,455	+				-1.4
1,516,455	+				+0.5
1,516,463	+				+0.4
1,516,537	+				+0.1
1,516,549	+				-0.3
1,516,557	-				+0.7
1,516,557	-				-0.2
1,516,557	-				+1.0
1,516,559	+				-0.3
1,516,560	+				+1.2
1,516,591	-				-0.4
1,516,602	-				+0.3
1,516,603	-				+0.3
1,516,603	-				-0.4
1,516,673	+				-0.9
1,516,712	+				-0.1
1,516,788	-				-0.5
1,516,860	-				-0.2
1,517,007	+		Shewana3_1302	0.14	+0.2
1,517,018	-		Shewana3_1302	0.15	-0.6
1,517,028	-		Shewana3_1302	0.16	+0.0
1,517,113	+		Shewana3_1302	0.25	+0.3
1,517,204	+		Shewana3_1302	0.34	+0.6
1,517,345	+		Shewana3_1302	0.48	-1.0
1,517,364	+		Shewana3_1302	0.50	-0.0
1,517,389	-		Shewana3_1302	0.53	-1.3
1,517,465	+		Shewana3_1302	0.60	-1.0
1,517,471	+		Shewana3_1302	0.61	-1.3
1,517,471	+		Shewana3_1302	0.61	+0.8
1,517,479	-		Shewana3_1302	0.62	-0.9