Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1144 and Shewana3_1145 are separated by 106 nucleotides Shewana3_1145 and Shewana3_1146 are separated by 129 nucleotides Shewana3_1146 and Shewana3_1147 are separated by 99 nucleotides
Shewana3_1144: Shewana3_1144 - peptidase S41 (RefSeq), at 1,349,390 to 1,352,671
_1144
Shewana3_1145: Shewana3_1145 - hypothetical protein (RefSeq), at 1,352,778 to 1,353,200
_1145
Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767
_1146
Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217
_1147
Position (kb) 1352
1353
1354 Strain fitness (log2 ratio) -1
0
1 at 1351.790 kb on + strand, within Shewana3_1144 at 1351.790 kb on + strand, within Shewana3_1144 at 1351.862 kb on + strand, within Shewana3_1144 at 1352.052 kb on - strand, within Shewana3_1144 at 1352.052 kb on - strand, within Shewana3_1144 at 1352.420 kb on + strand at 1352.493 kb on + strand at 1352.521 kb on - strand at 1352.700 kb on + strand at 1352.835 kb on - strand, within Shewana3_1145 at 1352.835 kb on - strand, within Shewana3_1145 at 1352.869 kb on + strand, within Shewana3_1145 at 1352.941 kb on + strand, within Shewana3_1145 at 1352.983 kb on + strand, within Shewana3_1145 at 1353.509 kb on + strand, within Shewana3_1146 at 1353.581 kb on - strand, within Shewana3_1146 at 1353.797 kb on - strand at 1353.841 kb on + strand at 1353.892 kb on + strand at 1353.897 kb on + strand at 1354.022 kb on - strand, within Shewana3_1147 at 1354.165 kb on - strand, within Shewana3_1147
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 1,351,790 + Shewana3_1144 0.73 -1.4 1,351,790 + Shewana3_1144 0.73 -0.5 1,351,862 + Shewana3_1144 0.75 -0.4 1,352,052 - Shewana3_1144 0.81 -0.3 1,352,052 - Shewana3_1144 0.81 -1.4 1,352,420 + -0.6 1,352,493 + +0.4 1,352,521 - -0.3 1,352,700 + -0.1 1,352,835 - Shewana3_1145 0.13 +0.1 1,352,835 - Shewana3_1145 0.13 +1.0 1,352,869 + Shewana3_1145 0.22 -0.5 1,352,941 + Shewana3_1145 0.39 +0.4 1,352,983 + Shewana3_1145 0.48 +0.9 1,353,509 + Shewana3_1146 0.41 +0.5 1,353,581 - Shewana3_1146 0.57 -0.6 1,353,797 - +0.3 1,353,841 + -0.1 1,353,892 + +1.5 1,353,897 + +0.5 1,354,022 - Shewana3_1147 0.44 +1.0 1,354,165 - Shewana3_1147 0.85 +0.7
Or see this region's nucleotide sequence