Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0816

Experiment: nitrite 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0815 and Shewana3_0816 are separated by 92 nucleotidesShewana3_0816 and Shewana3_0817 are separated by 96 nucleotides Shewana3_0815: Shewana3_0815 - IS4 family transposase (RefSeq), at 943,094 to 944,707 _0815 Shewana3_0816: Shewana3_0816 - DNA binding domain-containing protein (RefSeq), at 944,800 to 944,979 _0816 Shewana3_0817: Shewana3_0817 - hypothetical protein (RefSeq), at 945,076 to 945,810 _0817 Position (kb) 944 945Strain fitness (log2 ratio) -1 0 1at 944.892 kb on - strand, within Shewana3_0816at 944.935 kb on - strand, within Shewana3_0816at 945.013 kb on - strandat 945.088 kb on + strandat 945.541 kb on - strand, within Shewana3_0817at 945.901 kb on - strandat 945.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 15 mM
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944,892 - Shewana3_0816 0.51 +0.6
944,935 - Shewana3_0816 0.75 +0.8
945,013 - -0.7
945,088 + -0.2
945,541 - Shewana3_0817 0.63 -0.0
945,901 - +0.2
945,963 - +0.7

Or see this region's nucleotide sequence