Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0159 and Shewana3_0160 are separated by 1 nucleotides Shewana3_0160 and Shewana3_0161 are separated by 14 nucleotides Shewana3_0161 and Shewana3_0162 are separated by 63 nucleotides Shewana3_0162 and Shewana3_0163 are separated by 105 nucleotides
Shewana3_0159: Shewana3_0159 - general secretion pathway protein L (RefSeq), at 183,125 to 184,312
_0159
Shewana3_0160: Shewana3_0160 - general secretion pathway M protein (RefSeq), at 184,314 to 184,790
_0160
Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566
_0161
Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292
_0162
Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012
_0163
Position (kb) 184
185
186 Strain fitness (log2 ratio) -2
-1
0
1 at 183.805 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.901 kb on - strand, within Shewana3_0159 at 183.921 kb on - strand, within Shewana3_0159 at 183.964 kb on + strand, within Shewana3_0159 at 184.020 kb on - strand, within Shewana3_0159 at 184.049 kb on + strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.107 kb on + strand, within Shewana3_0159 at 184.107 kb on + strand, within Shewana3_0159 at 184.115 kb on - strand, within Shewana3_0159 at 184.115 kb on - strand, within Shewana3_0159 at 184.467 kb on - strand, within Shewana3_0160 at 184.472 kb on + strand, within Shewana3_0160 at 184.472 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.558 kb on + strand, within Shewana3_0160 at 184.566 kb on - strand, within Shewana3_0160 at 184.576 kb on + strand, within Shewana3_0160 at 184.627 kb on - strand, within Shewana3_0160 at 184.723 kb on + strand, within Shewana3_0160 at 184.947 kb on - strand, within Shewana3_0161 at 185.077 kb on - strand, within Shewana3_0161 at 185.108 kb on + strand, within Shewana3_0161 at 185.146 kb on + strand, within Shewana3_0161 at 185.174 kb on - strand, within Shewana3_0161 at 185.375 kb on - strand, within Shewana3_0161 at 185.490 kb on - strand at 185.529 kb on + strand at 185.890 kb on + strand, within Shewana3_0162 at 185.923 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.937 kb on + strand, within Shewana3_0162 at 185.945 kb on - strand, within Shewana3_0162 at 186.049 kb on - strand, within Shewana3_0162 at 186.122 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.270 kb on - strand at 186.406 kb on + strand at 186.552 kb on - strand, within Shewana3_0163 at 186.563 kb on + strand, within Shewana3_0163
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 183,805 + Shewana3_0159 0.57 -0.4 183,893 + Shewana3_0159 0.65 -1.8 183,893 + Shewana3_0159 0.65 -1.1 183,893 + Shewana3_0159 0.65 -1.9 183,893 + Shewana3_0159 0.65 -2.4 183,901 - Shewana3_0159 0.65 -1.3 183,921 - Shewana3_0159 0.67 -2.3 183,964 + Shewana3_0159 0.71 -1.8 184,020 - Shewana3_0159 0.75 -0.2 184,049 + Shewana3_0159 0.78 +0.1 184,057 - Shewana3_0159 0.78 -1.4 184,057 - Shewana3_0159 0.78 -1.7 184,107 + Shewana3_0159 0.83 -2.6 184,107 + Shewana3_0159 0.83 -1.8 184,115 - Shewana3_0159 0.83 -1.3 184,115 - Shewana3_0159 0.83 +0.2 184,467 - Shewana3_0160 0.32 -1.4 184,472 + Shewana3_0160 0.33 -2.0 184,472 + Shewana3_0160 0.33 -1.1 184,558 + Shewana3_0160 0.51 -1.5 184,558 + Shewana3_0160 0.51 -1.2 184,558 + Shewana3_0160 0.51 -0.4 184,558 + Shewana3_0160 0.51 -2.7 184,558 + Shewana3_0160 0.51 -0.8 184,566 - Shewana3_0160 0.53 -2.0 184,576 + Shewana3_0160 0.55 -2.2 184,627 - Shewana3_0160 0.66 -0.2 184,723 + Shewana3_0160 0.86 -1.9 184,947 - Shewana3_0161 0.19 -1.9 185,077 - Shewana3_0161 0.36 -0.1 185,108 + Shewana3_0161 0.40 -2.2 185,146 + Shewana3_0161 0.45 -1.6 185,174 - Shewana3_0161 0.48 -0.9 185,375 - Shewana3_0161 0.75 -1.2 185,490 - -2.5 185,529 + -0.3 185,890 + Shewana3_0162 0.39 -0.0 185,923 + Shewana3_0162 0.44 +0.6 185,937 + Shewana3_0162 0.46 -0.6 185,937 + Shewana3_0162 0.46 +0.8 185,945 - Shewana3_0162 0.48 -0.4 186,049 - Shewana3_0162 0.63 -0.5 186,122 - Shewana3_0162 0.74 -0.0 186,171 - Shewana3_0162 0.82 +0.1 186,171 - Shewana3_0162 0.82 -0.4 186,270 - +0.3 186,406 + +0.4 186,552 - Shewana3_0163 0.25 +0.0 186,563 + Shewana3_0163 0.27 -1.1
Or see this region's nucleotide sequence