Experiment: nitrite 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0151 and Shewana3_0152 overlap by 4 nucleotides Shewana3_0152 and Shewana3_0153 are separated by 3 nucleotides
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Shewana3_0152: Shewana3_0152 - type II secretion system protein E (GspE) (RefSeq), at 177,108 to 178,673
_0152
Shewana3_0153: Shewana3_0153 - general secretion pathway protein F (RefSeq), at 178,677 to 179,900
_0153
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.290 kb on + strand, within Shewana3_0151 at 176.298 kb on - strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.477 kb on + strand, within Shewana3_0151 at 176.528 kb on - strand, within Shewana3_0151 at 176.677 kb on - strand, within Shewana3_0151 at 176.733 kb on - strand, within Shewana3_0151 at 176.734 kb on + strand, within Shewana3_0151 at 177.033 kb on - strand at 177.033 kb on - strand at 177.040 kb on + strand at 177.181 kb on + strand at 177.284 kb on + strand, within Shewana3_0152 at 177.292 kb on - strand, within Shewana3_0152 at 177.364 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.934 kb on + strand, within Shewana3_0152 at 178.087 kb on - strand, within Shewana3_0152 at 178.108 kb on + strand, within Shewana3_0152 at 178.116 kb on - strand, within Shewana3_0152 at 178.138 kb on + strand, within Shewana3_0152 at 178.274 kb on + strand, within Shewana3_0152 at 178.358 kb on + strand, within Shewana3_0152 at 178.366 kb on - strand, within Shewana3_0152 at 178.390 kb on + strand, within Shewana3_0152 at 178.521 kb on - strand at 178.647 kb on + strand at 178.674 kb on + strand at 178.676 kb on - strand at 178.741 kb on - strand at 179.023 kb on + strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.474 kb on + strand, within Shewana3_0153 at 179.483 kb on + strand, within Shewana3_0153 at 179.491 kb on - strand, within Shewana3_0153 at 179.530 kb on + strand, within Shewana3_0153 at 179.598 kb on + strand, within Shewana3_0153 at 179.637 kb on + strand, within Shewana3_0153 at 179.654 kb on + strand, within Shewana3_0153 at 179.666 kb on + strand, within Shewana3_0153
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 15 mM remove 176,223 + Shewana3_0151 0.58 -1.3 176,223 + Shewana3_0151 0.58 -1.3 176,223 + Shewana3_0151 0.58 -1.7 176,223 + Shewana3_0151 0.58 -2.9 176,231 - Shewana3_0151 0.58 -1.2 176,231 - Shewana3_0151 0.58 -1.3 176,290 + Shewana3_0151 0.61 -2.9 176,298 - Shewana3_0151 0.61 -2.5 176,349 + Shewana3_0151 0.64 -0.4 176,349 + Shewana3_0151 0.64 -0.9 176,349 + Shewana3_0151 0.64 -1.0 176,477 + Shewana3_0151 0.70 -3.1 176,528 - Shewana3_0151 0.72 -1.0 176,677 - Shewana3_0151 0.79 -0.9 176,733 - Shewana3_0151 0.82 -1.4 176,734 + Shewana3_0151 0.82 -0.7 177,033 - -2.0 177,033 - -1.4 177,040 + -1.6 177,181 + -1.6 177,284 + Shewana3_0152 0.11 -1.2 177,292 - Shewana3_0152 0.12 -0.2 177,364 - Shewana3_0152 0.16 -0.8 177,547 - Shewana3_0152 0.28 -3.3 177,547 - Shewana3_0152 0.28 -0.8 177,934 + Shewana3_0152 0.53 -1.4 178,087 - Shewana3_0152 0.63 -0.9 178,108 + Shewana3_0152 0.64 -2.8 178,116 - Shewana3_0152 0.64 -2.4 178,138 + Shewana3_0152 0.66 -1.2 178,274 + Shewana3_0152 0.74 -1.4 178,358 + Shewana3_0152 0.80 -1.6 178,366 - Shewana3_0152 0.80 -1.3 178,390 + Shewana3_0152 0.82 -1.4 178,521 - -2.3 178,647 + -3.0 178,674 + -1.3 178,676 - -1.8 178,741 - -0.4 179,023 + Shewana3_0153 0.28 -0.6 179,031 - Shewana3_0153 0.29 -1.5 179,031 - Shewana3_0153 0.29 -1.0 179,474 + Shewana3_0153 0.65 -1.6 179,483 + Shewana3_0153 0.66 -2.3 179,491 - Shewana3_0153 0.67 -1.1 179,530 + Shewana3_0153 0.70 -2.2 179,598 + Shewana3_0153 0.75 -0.9 179,637 + Shewana3_0153 0.78 -1.4 179,654 + Shewana3_0153 0.80 +0.5 179,666 + Shewana3_0153 0.81 -1.0
Or see this region's nucleotide sequence