Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2725 and Shew_2726 are separated by 330 nucleotides Shew_2726 and Shew_2727 are separated by 167 nucleotides Shew_2727 and Shew_2728 are separated by 12 nucleotides
Shew_2725: Shew_2725 - ribokinase-like domain-containing protein (RefSeq), at 3,224,529 to 3,225,620
_2725
Shew_2726: Shew_2726 - hypothetical protein (RefSeq), at 3,225,951 to 3,226,403
_2726
Shew_2727: Shew_2727 - hypothetical protein (RefSeq), at 3,226,571 to 3,227,269
_2727
Shew_2728: Shew_2728 - hypothetical protein (RefSeq), at 3,227,282 to 3,228,163
_2728
Position (kb)
3225
3226
3227 Strain fitness (log2 ratio)
-1
0
1 at 3225.205 kb on - strand, within Shew_2725 at 3225.347 kb on + strand, within Shew_2725 at 3225.469 kb on - strand, within Shew_2725 at 3225.646 kb on - strand at 3225.910 kb on + strand at 3226.131 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.767 kb on - strand, within Shew_2727 at 3227.013 kb on - strand, within Shew_2727 at 3227.043 kb on - strand, within Shew_2727 at 3227.168 kb on - strand, within Shew_2727
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 3,225,205 - Shew_2725 0.62 +0.3 3,225,347 + Shew_2725 0.75 +0.1 3,225,469 - Shew_2725 0.86 -0.2 3,225,646 - +0.3 3,225,910 + +0.1 3,226,131 - Shew_2726 0.40 +0.1 3,226,168 - Shew_2726 0.48 -0.2 3,226,168 - Shew_2726 0.48 -0.5 3,226,168 - Shew_2726 0.48 -0.9 3,226,168 - Shew_2726 0.48 -0.6 3,226,767 - Shew_2727 0.28 +0.1 3,227,013 - Shew_2727 0.63 -0.2 3,227,043 - Shew_2727 0.68 +0.9 3,227,168 - Shew_2727 0.85 +0.3
Or see this region's nucleotide sequence