Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0837 and Shew_0838 are separated by 64 nucleotides Shew_0838 and Shew_0839 are separated by 13 nucleotides Shew_0839 and Shew_0840 are separated by 179 nucleotides
Shew_0837: Shew_0837 - TPR repeat-containing protein (RefSeq), at 960,198 to 961,607
_0837
Shew_0838: Shew_0838 - SlyX family protein (RefSeq), at 961,672 to 961,884
_0838
Shew_0839: Shew_0839 - WD-40 repeat-containing protein (RefSeq), at 961,898 to 962,866
_0839
Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813
_0840
Position (kb) 961
962
963 Strain fitness (log2 ratio) -2
-1
0
1 at 961.199 kb on - strand, within Shew_0837 at 961.911 kb on + strand at 962.539 kb on - strand, within Shew_0839 at 962.692 kb on + strand, within Shew_0839 at 962.785 kb on + strand at 962.793 kb on - strand at 962.986 kb on - strand at 963.010 kb on - strand at 963.048 kb on - strand at 963.146 kb on - strand, within Shew_0840 at 963.288 kb on - strand, within Shew_0840 at 963.335 kb on + strand, within Shew_0840 at 963.693 kb on + strand, within Shew_0840
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 961,199 - Shew_0837 0.71 -0.2 961,911 + -0.0 962,539 - Shew_0839 0.66 +1.0 962,692 + Shew_0839 0.82 +0.5 962,785 + -1.7 962,793 - -0.1 962,986 - +0.1 963,010 - +0.5 963,048 - +0.5 963,146 - Shew_0840 0.13 +0.6 963,288 - Shew_0840 0.32 -1.2 963,335 + Shew_0840 0.38 -2.2 963,693 + Shew_0840 0.84 +0.5
Or see this region's nucleotide sequence