Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0434 and Shew_0435 are separated by 247 nucleotides Shew_0435 and Shew_0436 are separated by 14 nucleotides Shew_0436 and Shew_0437 are separated by 133 nucleotides Shew_0437 and Shew_0438 are separated by 48 nucleotides
Shew_0434: Shew_0434 - hypothetical protein (RefSeq), at 485,176 to 485,487
_0434
Shew_0435: Shew_0435 - hypothetical protein (RefSeq), at 485,735 to 486,256
_0435
Shew_0436: Shew_0436 - diguanylate cyclase/phosphodiesterase (RefSeq), at 486,271 to 488,043
_0436
Shew_0437: Shew_0437 - hypothetical protein (RefSeq), at 488,177 to 488,488
_0437
Shew_0438: Shew_0438 - GumN family protein (RefSeq), at 488,537 to 489,421
_0438
Position (kb) 486
487
488
489 Strain fitness (log2 ratio) -1
0
1 at 485.365 kb on + strand, within Shew_0434 at 485.406 kb on + strand, within Shew_0434 at 485.698 kb on - strand at 486.035 kb on - strand, within Shew_0435 at 486.333 kb on + strand at 486.443 kb on - strand at 486.482 kb on - strand, within Shew_0436 at 486.554 kb on - strand, within Shew_0436 at 486.709 kb on + strand, within Shew_0436 at 486.875 kb on - strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 487.012 kb on + strand, within Shew_0436 at 487.218 kb on + strand, within Shew_0436 at 487.419 kb on + strand, within Shew_0436 at 487.426 kb on + strand, within Shew_0436 at 487.427 kb on - strand, within Shew_0436 at 487.897 kb on - strand at 487.929 kb on - strand at 488.023 kb on + strand at 488.086 kb on + strand at 488.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 485,365 + Shew_0434 0.61 +0.2 485,406 + Shew_0434 0.74 +0.4 485,698 - +1.0 486,035 - Shew_0435 0.57 -1.1 486,333 + +0.1 486,443 - -1.2 486,482 - Shew_0436 0.12 +0.4 486,554 - Shew_0436 0.16 +0.6 486,709 + Shew_0436 0.25 +0.6 486,875 - Shew_0436 0.34 +0.2 486,905 + Shew_0436 0.36 +0.5 486,905 + Shew_0436 0.36 +0.3 487,012 + Shew_0436 0.42 +0.4 487,218 + Shew_0436 0.53 +0.3 487,419 + Shew_0436 0.65 +0.8 487,426 + Shew_0436 0.65 +0.1 487,427 - Shew_0436 0.65 -0.4 487,897 - -0.2 487,929 - +0.4 488,023 + +0.5 488,086 + -0.3 488,094 - +1.5
Or see this region's nucleotide sequence