Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07165

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2
1,305,786	+		MMJJ_RS07160	0.24	-3.3
1,305,801	+		MMJJ_RS07160	0.25	-3.7
1,305,835	-		MMJJ_RS07160	0.28	-4.6
1,305,835	-		MMJJ_RS07160	0.28	-1.6
1,305,836	+		MMJJ_RS07160	0.28	-3.5
1,305,900	-		MMJJ_RS07160	0.33	-3.8
1,305,900	-		MMJJ_RS07160	0.33	-4.6
1,305,910	-		MMJJ_RS07160	0.34	-0.1
1,305,923	-		MMJJ_RS07160	0.35	-3.4
1,305,923	-		MMJJ_RS07160	0.35	-4.3
1,305,923	-		MMJJ_RS07160	0.35	-1.2
1,305,924	+		MMJJ_RS07160	0.35	-2.1
1,305,924	+		MMJJ_RS07160	0.35	-3.9
1,305,927	-		MMJJ_RS07160	0.35	-0.5
1,305,927	-		MMJJ_RS07160	0.35	-1.6
1,305,942	+		MMJJ_RS07160	0.37	-4.6
1,306,004	-		MMJJ_RS07160	0.42	-3.9
1,306,004	-		MMJJ_RS07160	0.42	-4.3
1,306,006	-		MMJJ_RS07160	0.42	-4.7
1,306,006	-		MMJJ_RS07160	0.42	-3.0
1,306,006	-		MMJJ_RS07160	0.42	-4.0
1,306,006	-		MMJJ_RS07160	0.42	-2.9
1,306,006	-		MMJJ_RS07160	0.42	-3.6
1,306,007	+		MMJJ_RS07160	0.42	-2.3
1,306,007	+		MMJJ_RS07160	0.42	-3.7
1,306,007	+		MMJJ_RS07160	0.42	-4.2
1,306,028	+		MMJJ_RS07160	0.43	-3.9
1,306,068	-		MMJJ_RS07160	0.47	-3.4
1,306,109	-		MMJJ_RS07160	0.50	-4.4
1,306,131	-		MMJJ_RS07160	0.52	-3.2
1,306,131	-		MMJJ_RS07160	0.52	-4.1
1,306,131	-		MMJJ_RS07160	0.52	-4.6
1,306,131	-		MMJJ_RS07160	0.52	-2.9
1,306,132	+		MMJJ_RS07160	0.52	-2.9
1,306,155	+		MMJJ_RS07160	0.54	-4.6
1,306,192	+		MMJJ_RS07160	0.57	-1.6
1,306,192	+		MMJJ_RS07160	0.57	-4.3
1,306,194	-		MMJJ_RS07160	0.57	-4.4
1,306,233	-		MMJJ_RS07160	0.60	-3.8
1,306,240	-		MMJJ_RS07160	0.60	-2.7
1,306,245	-		MMJJ_RS07160	0.61	-2.9
1,306,245	-		MMJJ_RS07160	0.61	-3.1
1,306,245	-		MMJJ_RS07160	0.61	-4.4
1,306,252	-		MMJJ_RS07160	0.61	-2.0
1,306,252	-		MMJJ_RS07160	0.61	-2.0
1,306,253	+		MMJJ_RS07160	0.61	-2.1
1,306,256	-		MMJJ_RS07160	0.62	-2.1
1,306,256	-		MMJJ_RS07160	0.62	-2.8
1,306,257	+		MMJJ_RS07160	0.62	-4.2
1,306,287	-		MMJJ_RS07160	0.64	-4.9
1,306,294	+		MMJJ_RS07160	0.65	+1.5
1,306,294	+		MMJJ_RS07160	0.65	-0.5
1,306,294	+		MMJJ_RS07160	0.65	-3.4
1,306,298	-		MMJJ_RS07160	0.65	-3.6
1,306,301	+		MMJJ_RS07160	0.65	-4.3
1,306,334	+		MMJJ_RS07160	0.68	-4.0
1,306,357	+		MMJJ_RS07160	0.70	-2.6
1,306,461	-		MMJJ_RS07160	0.78	-4.7
1,306,461	-		MMJJ_RS07160	0.78	-3.6
1,306,461	-		MMJJ_RS07160	0.78	-1.3
1,306,462	+		MMJJ_RS07160	0.78	-5.2
1,306,462	+		MMJJ_RS07160	0.78	-4.1
1,306,462	+		MMJJ_RS07160	0.78	-4.5
1,306,462	+		MMJJ_RS07160	0.78	-2.9
1,306,462	+		MMJJ_RS07160	0.78	-3.7
1,306,562	+		MMJJ_RS07160	0.86	-5.8
1,306,591	-		MMJJ_RS07160	0.89	-2.5
1,306,591	-		MMJJ_RS07160	0.89	-1.8
1,306,591	-		MMJJ_RS07160	0.89	-4.9
1,306,592	+		MMJJ_RS07160	0.89	-2.7
1,306,592	+		MMJJ_RS07160	0.89	-3.9
1,306,595	-		MMJJ_RS07160	0.89	-3.9
1,306,595	-		MMJJ_RS07160	0.89	-1.3
1,306,595	-		MMJJ_RS07160	0.89	-3.7
1,306,595	-		MMJJ_RS07160	0.89	-5.0
1,306,595	-		MMJJ_RS07160	0.89	-5.4
1,306,596	+		MMJJ_RS07160	0.89	-5.2
1,306,596	+		MMJJ_RS07160	0.89	-4.2
1,306,596	+		MMJJ_RS07160	0.89	-2.8
1,306,596	+		MMJJ_RS07160	0.89	-6.1
1,306,596	+		MMJJ_RS07160	0.89	-2.9
1,306,597	-		MMJJ_RS07160	0.89	-4.4
1,306,597	-		MMJJ_RS07160	0.89	-3.7
1,306,597	-		MMJJ_RS07160	0.89	-3.2
1,306,617	+				-4.8
1,306,682	-				-2.1
1,306,682	-				-0.1
1,306,683	+				-3.5
1,306,683	+				+1.1
1,306,683	+				-1.8
1,306,683	+				-2.9
1,306,687	+				-2.3
1,306,710	+				-3.6
1,306,761	+				+0.1
1,306,761	+				-0.4
1,306,765	+				+0.8
1,306,792	+				-0.7
1,306,814	+				+0.5
1,306,814	+				-0.9
1,306,814	+				-1.6
1,306,824	-				-2.7
1,306,836	-				-1.6
1,306,840	-				-1.0
1,306,840	-				-1.2
1,306,864	-				-2.1
1,306,961	-				-2.5
1,307,013	-				-1.1
1,307,039	+				-2.6
1,307,039	+				-1.3
1,307,039	+				-0.4
1,307,039	+				-3.4
1,307,154	+		MMJJ_RS07165	0.11	-0.7
1,307,156	+		MMJJ_RS07165	0.11	-3.8
1,307,302	-		MMJJ_RS07165	0.15	-1.4
1,307,303	+		MMJJ_RS07165	0.15	-3.6
1,307,303	+		MMJJ_RS07165	0.15	+0.7
1,307,307	-		MMJJ_RS07165	0.15	-3.8
1,307,308	+		MMJJ_RS07165	0.15	-2.0
1,307,308	+		MMJJ_RS07165	0.15	-3.1
1,307,310	+		MMJJ_RS07165	0.15	-2.5
1,307,338	-		MMJJ_RS07165	0.16	-1.6
1,307,358	-		MMJJ_RS07165	0.17	-2.1
1,307,358	-		MMJJ_RS07165	0.17	-1.8
1,307,398	-		MMJJ_RS07165	0.18	-3.2
1,307,398	-		MMJJ_RS07165	0.18	-1.0
1,307,425	+		MMJJ_RS07165	0.18	-3.8
1,307,499	+		MMJJ_RS07165	0.20	+0.1
1,307,623	+		MMJJ_RS07165	0.24	-1.6
1,307,632	-		MMJJ_RS07165	0.24	-2.1
1,307,632	-		MMJJ_RS07165	0.24	-1.8
1,307,878	-		MMJJ_RS07165	0.31	+0.7
1,307,879	+		MMJJ_RS07165	0.31	-2.4
1,307,879	+		MMJJ_RS07165	0.31	-1.8
1,307,879	+		MMJJ_RS07165	0.31	-3.3
1,307,879	+		MMJJ_RS07165	0.31	-3.3
1,307,881	-		MMJJ_RS07165	0.31	+0.1
1,307,924	+		MMJJ_RS07165	0.32	-3.0
1,307,956	+		MMJJ_RS07165	0.33	+0.9
1,308,020	+		MMJJ_RS07165	0.35	-1.4
1,308,024	+		MMJJ_RS07165	0.35	-1.3
1,308,029	+		MMJJ_RS07165	0.35	-2.6
1,308,094	-		MMJJ_RS07165	0.37	-1.1
1,308,108	-		MMJJ_RS07165	0.38	-0.7
1,308,109	+		MMJJ_RS07165	0.38	-1.0
1,308,127	+		MMJJ_RS07165	0.38	-1.8
1,308,167	-		MMJJ_RS07165	0.39	-1.4
1,308,168	+		MMJJ_RS07165	0.39	-1.7
1,308,208	+		MMJJ_RS07165	0.40	-1.0
1,308,208	+		MMJJ_RS07165	0.40	-2.7
1,308,208	+		MMJJ_RS07165	0.40	-0.6
1,308,218	+		MMJJ_RS07165	0.41	-0.1
1,308,218	+		MMJJ_RS07165	0.41	-3.0
1,308,222	-		MMJJ_RS07165	0.41	-1.2
1,308,274	-		MMJJ_RS07165	0.42	-2.0
1,308,274	-		MMJJ_RS07165	0.42	-0.7
1,308,274	-		MMJJ_RS07165	0.42	-3.5
1,308,274	-		MMJJ_RS07165	0.42	-2.1
1,308,274	-		MMJJ_RS07165	0.42	+0.4
1,308,275	+		MMJJ_RS07165	0.42	-3.1
1,308,275	+		MMJJ_RS07165	0.42	-1.9
1,308,275	+		MMJJ_RS07165	0.42	-1.8
1,308,285	-		MMJJ_RS07165	0.42	-1.5
1,308,289	+		MMJJ_RS07165	0.43	-1.2
1,308,358	-		MMJJ_RS07165	0.45	-2.4
1,308,359	+		MMJJ_RS07165	0.45	-2.2
1,308,403	-		MMJJ_RS07165	0.46	-1.0
1,308,423	-		MMJJ_RS07165	0.46	-1.8
1,308,423	-		MMJJ_RS07165	0.46	+0.3
1,308,438	+		MMJJ_RS07165	0.47	-1.5
1,308,438	+				+0.5
1,308,445	-		MMJJ_RS07165	0.47	-1.2
1,308,456	+		MMJJ_RS07165	0.47	-2.7
1,308,456	+		MMJJ_RS07165	0.47	-1.0
1,308,466	+		MMJJ_RS07165	0.48	-1.9
1,308,510	+		MMJJ_RS07165	0.49	-2.5
1,308,511	-		MMJJ_RS07165	0.49	-2.8
1,308,511	-		MMJJ_RS07165	0.49	+0.4
1,308,511	-		MMJJ_RS07165	0.49	-3.4
1,308,511	-		MMJJ_RS07165	0.49	-1.9
1,308,511	-		MMJJ_RS07165	0.49	-0.3
1,308,511	-		MMJJ_RS07165	0.49	-3.6
1,308,511	-		MMJJ_RS07165	0.49	+0.7
1,308,511	-		MMJJ_RS07165	0.49	-0.2
1,308,512	+		MMJJ_RS07165	0.49	-0.8
1,308,512	+		MMJJ_RS07165	0.49	-2.2
1,308,512	+		MMJJ_RS07165	0.49	-2.2
1,308,512	+		MMJJ_RS07165	0.49	+0.8
1,308,512	+		MMJJ_RS07165	0.49	-3.1
1,308,512	+		MMJJ_RS07165	0.49	-2.8
1,308,512	+		MMJJ_RS07165	0.49	-2.5
1,308,515	-		MMJJ_RS07165	0.49	-2.1
1,308,515	-		MMJJ_RS07165	0.49	-0.4
1,308,515	-		MMJJ_RS07165	0.49	-0.6
1,308,515	-		MMJJ_RS07165	0.49	-1.7
1,308,573	-		MMJJ_RS07165	0.51	-0.3
1,308,633	+		MMJJ_RS07165	0.52	-2.0
1,308,637	-		MMJJ_RS07165	0.52	-1.0
1,308,777	-		MMJJ_RS07165	0.56	-2.8
1,308,812	+		MMJJ_RS07165	0.57	-1.3
1,308,812	+		MMJJ_RS07165	0.57	-0.5
1,308,816	+		MMJJ_RS07165	0.57	-0.8
1,308,832	+		MMJJ_RS07165	0.58	-0.3
1,308,866	+		MMJJ_RS07165	0.59	-2.1
1,308,875	+		MMJJ_RS07165	0.59	-1.8
1,308,893	-		MMJJ_RS07165	0.60	-1.3
1,308,930	+		MMJJ_RS07165	0.61	-2.7
1,308,940	+		MMJJ_RS07165	0.61	-3.2
1,308,940	+		MMJJ_RS07165	0.61	-1.9
1,308,942	-		MMJJ_RS07165	0.61	-1.9
1,308,942	-		MMJJ_RS07165	0.61	-3.0
1,308,961	-		MMJJ_RS07165	0.61	-1.2
1,309,264	-		MMJJ_RS07165	0.70	+0.7
1,309,283	+		MMJJ_RS07165	0.70	-1.4
1,309,597	-		MMJJ_RS07165	0.79	-2.6
1,309,598	+		MMJJ_RS07165	0.79	-1.9
1,309,604	-		MMJJ_RS07165	0.79	-2.6
1,309,636	+		MMJJ_RS07165	0.80	-0.1
1,309,793	+		MMJJ_RS07165	0.85	-2.0
1,309,835	+		MMJJ_RS07165	0.86	+0.3
1,309,864	+		MMJJ_RS07165	0.87	-2.8
1,309,960	-		MMJJ_RS07165	0.89	-2.7
1,309,961	+		MMJJ_RS07165	0.89	-2.9
1,310,007	+				-0.7
1,310,085	-				+0.9
1,310,139	+				-2.0
1,310,139	+				+1.5
1,310,139	+				-3.5
1,310,139	+				-1.2
1,310,142	-				-0.8
1,310,142	-				-0.8
1,310,143	+				-2.2
1,310,145	-				-2.7
1,310,145	-				-0.1
1,310,146	+				-2.1
1,310,207	+				-1.5
1,310,207	+				+0.2
1,310,220	-				-2.5
1,310,221	+				-2.0
1,310,340	-				-1.5
1,310,340	-				+0.5
1,310,341	+				+1.2
1,310,341	+				-2.4
1,310,341	+				-1.3
1,310,375	+				-1.9
1,310,389	+				-1.2
1,310,396	-				+1.1
1,310,397	+				-1.1
1,310,398	-				+0.2
1,310,398	-				-0.6
1,310,398	-				+0.3
1,310,399	+				-0.2
1,310,399	+				+0.2
1,310,410	+				-1.3
1,310,416	-				+0.3
1,310,417	+				-3.9
1,310,418	-				+0.1
1,310,418	-				+0.7
1,310,418	-				+1.7
1,310,419	+				-0.8
1,310,419	+				-0.5
1,310,419	+				+1.1
1,310,419	+				-0.1
1,310,419	+				+2.1
1,310,421	-				+0.0
1,310,421	-				+0.6
1,310,422	+				+0.5
1,310,422	+				-0.4
1,310,422	+				-0.8
1,310,422	+				+0.1
1,310,422	+				+0.0
1,310,479	-				+0.8
1,310,480	+				+0.9
1,310,504	+				-0.6
1,310,528	+				+0.2
1,310,606	-				-1.3
1,310,968	-		MMJJ_RS07170	0.19	-3.0
1,311,241	-		MMJJ_RS07170	0.40	-1.9