Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33720

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33710 and AZOBR_RS33715 are separated by 100 nucleotidesAZOBR_RS33715 and AZOBR_RS33720 are separated by 308 nucleotidesAZOBR_RS33720 and AZOBR_RS33725 are separated by 35 nucleotides AZOBR_RS33710: AZOBR_RS33710 - putative aminotransferase, at 91,186 to 92,439 _RS33710 AZOBR_RS33715: AZOBR_RS33715 - hypothetical protein, at 92,540 to 92,836 _RS33715 AZOBR_RS33720: AZOBR_RS33720 - UDP-glucose 6-dehydrogenase, at 93,145 to 94,470 _RS33720 AZOBR_RS33725: AZOBR_RS33725 - phosphomannomutase, at 94,506 to 95,912 _RS33725 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1at 92.251 kb on + strand, within AZOBR_RS33710at 92.251 kb on + strand, within AZOBR_RS33710at 92.252 kb on - strand, within AZOBR_RS33710at 92.275 kb on + strand, within AZOBR_RS33710at 92.326 kb on + strandat 92.326 kb on + strandat 92.327 kb on - strandat 92.892 kb on + strandat 92.892 kb on + strandat 94.999 kb on - strand, within AZOBR_RS33725

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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92,251 + AZOBR_RS33710 0.85 +0.0
92,251 + AZOBR_RS33710 0.85 -0.5
92,252 - AZOBR_RS33710 0.85 +0.4
92,275 + AZOBR_RS33710 0.87 -0.6
92,326 + -0.5
92,326 + +0.2
92,327 - +1.1
92,892 + -0.4
92,892 + -0.4
94,999 - AZOBR_RS33725 0.35 +0.7

Or see this region's nucleotide sequence