Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31210

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31205 and AZOBR_RS31210 overlap by 4 nucleotidesAZOBR_RS31210 and AZOBR_RS31215 are separated by 38 nucleotides AZOBR_RS31205: AZOBR_RS31205 - sugar ABC transporter permease, at 364,447 to 365,511 _RS31205 AZOBR_RS31210: AZOBR_RS31210 - sugar ABC transporter ATP-binding protein, at 365,508 to 367,058 _RS31210 AZOBR_RS31215: AZOBR_RS31215 - sugar ABC transporter substrate-binding protein, at 367,097 to 368,062 _RS31215 Position (kb) 365 366 367 368Strain fitness (log2 ratio) -1 0 1 2at 364.853 kb on + strand, within AZOBR_RS31205at 364.853 kb on + strand, within AZOBR_RS31205at 364.853 kb on + strand, within AZOBR_RS31205at 364.854 kb on - strand, within AZOBR_RS31205at 365.094 kb on + strand, within AZOBR_RS31205at 366.424 kb on + strand, within AZOBR_RS31210at 366.425 kb on - strand, within AZOBR_RS31210at 366.425 kb on - strand, within AZOBR_RS31210at 367.123 kb on - strandat 367.683 kb on + strand, within AZOBR_RS31215at 367.684 kb on - strand, within AZOBR_RS31215at 367.684 kb on - strand, within AZOBR_RS31215at 367.684 kb on - strand, within AZOBR_RS31215

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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364,853 + AZOBR_RS31205 0.38 -0.1
364,853 + AZOBR_RS31205 0.38 +0.0
364,853 + AZOBR_RS31205 0.38 -0.0
364,854 - AZOBR_RS31205 0.38 +0.4
365,094 + AZOBR_RS31205 0.61 +0.5
366,424 + AZOBR_RS31210 0.59 +0.5
366,425 - AZOBR_RS31210 0.59 +0.7
366,425 - AZOBR_RS31210 0.59 -0.3
367,123 - +2.3
367,683 + AZOBR_RS31215 0.61 +0.4
367,684 - AZOBR_RS31215 0.61 +0.3
367,684 - AZOBR_RS31215 0.61 -1.3
367,684 - AZOBR_RS31215 0.61 +1.6

Or see this region's nucleotide sequence