Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31195

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS31185 and AZOBR_RS31190 are separated by 189 nucleotidesAZOBR_RS31190 and AZOBR_RS31195 are separated by 89 nucleotidesAZOBR_RS31195 and AZOBR_RS31200 are separated by 6 nucleotidesAZOBR_RS31200 and AZOBR_RS31205 are separated by 4 nucleotides AZOBR_RS31185: AZOBR_RS31185 - ribose-phosphate pyrophosphokinase, at 361,057 to 361,992 _RS31185 AZOBR_RS31190: AZOBR_RS31190 - 50S ribosomal protein L25, at 362,182 to 362,793 _RS31190 AZOBR_RS31195: AZOBR_RS31195 - peptidyl-tRNA hydrolase, at 362,883 to 363,458 _RS31195 AZOBR_RS31200: AZOBR_RS31200 - sugar ABC transporter permease, at 363,465 to 364,442 _RS31200 AZOBR_RS31205: AZOBR_RS31205 - sugar ABC transporter permease, at 364,447 to 365,511 _RS31205 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1at 361.990 kb on + strandat 362.853 kb on + strandat 363.457 kb on - strandat 363.601 kb on + strand, within AZOBR_RS31200at 363.601 kb on + strand, within AZOBR_RS31200at 363.602 kb on - strand, within AZOBR_RS31200at 363.602 kb on - strand, within AZOBR_RS31200at 363.653 kb on - strand, within AZOBR_RS31200at 363.653 kb on - strand, within AZOBR_RS31200at 363.658 kb on + strand, within AZOBR_RS31200at 363.751 kb on + strand, within AZOBR_RS31200at 363.803 kb on - strand, within AZOBR_RS31200at 363.803 kb on - strand, within AZOBR_RS31200at 363.803 kb on - strand, within AZOBR_RS31200

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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361,990 + -1.8
362,853 + -0.5
363,457 - +0.6
363,601 + AZOBR_RS31200 0.14 -0.7
363,601 + AZOBR_RS31200 0.14 +0.0
363,602 - AZOBR_RS31200 0.14 +0.1
363,602 - AZOBR_RS31200 0.14 +0.6
363,653 - AZOBR_RS31200 0.19 -1.1
363,653 - AZOBR_RS31200 0.19 -0.1
363,658 + AZOBR_RS31200 0.20 -0.6
363,751 + AZOBR_RS31200 0.29 -0.3
363,803 - AZOBR_RS31200 0.35 +0.3
363,803 - AZOBR_RS31200 0.35 -1.1
363,803 - AZOBR_RS31200 0.35 +0.6

Or see this region's nucleotide sequence