Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25855

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25850 and AZOBR_RS25855 overlap by 4 nucleotidesAZOBR_RS25855 and AZOBR_RS25860 are separated by 367 nucleotidesAZOBR_RS25860 and AZOBR_RS25865 are separated by 40 nucleotides AZOBR_RS25850: AZOBR_RS25850 - putative Phenylalanine racemase (ATP-hydrolyzing), at 851,493 to 853,703 _RS25850 AZOBR_RS25855: AZOBR_RS25855 - amino acid adenylation (fragment), at 853,700 to 857,362 _RS25855 AZOBR_RS25860: AZOBR_RS25860 - hypothetical protein, at 857,730 to 857,933 _RS25860 AZOBR_RS25865: AZOBR_RS25865 - alkaline phosphatase, at 857,974 to 858,579 _RS25865 Position (kb) 853 854 855 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 853.264 kb on + strand, within AZOBR_RS25850at 853.384 kb on + strand, within AZOBR_RS25850at 853.384 kb on + strand, within AZOBR_RS25850at 853.385 kb on - strand, within AZOBR_RS25850at 853.385 kb on - strand, within AZOBR_RS25850at 853.385 kb on - strand, within AZOBR_RS25850at 853.666 kb on + strandat 853.666 kb on + strandat 853.666 kb on + strandat 853.666 kb on + strandat 853.666 kb on + strandat 853.666 kb on + strandat 853.667 kb on - strandat 853.667 kb on - strandat 853.667 kb on - strandat 853.667 kb on - strandat 853.667 kb on - strandat 853.667 kb on - strandat 853.675 kb on + strandat 853.676 kb on - strandat 853.676 kb on - strandat 853.835 kb on - strandat 853.836 kb on + strandat 853.836 kb on + strandat 853.836 kb on + strandat 853.836 kb on + strandat 853.836 kb on + strandat 853.837 kb on - strandat 853.837 kb on - strandat 853.837 kb on - strandat 853.837 kb on - strandat 853.837 kb on - strandat 854.025 kb on + strandat 854.025 kb on + strandat 855.889 kb on + strand, within AZOBR_RS25855at 855.889 kb on + strand, within AZOBR_RS25855at 855.889 kb on + strand, within AZOBR_RS25855at 855.889 kb on + strand, within AZOBR_RS25855at 855.890 kb on - strand, within AZOBR_RS25855at 855.890 kb on - strand, within AZOBR_RS25855at 855.890 kb on - strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.891 kb on + strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 855.892 kb on - strand, within AZOBR_RS25855at 856.204 kb on + strand, within AZOBR_RS25855at 856.209 kb on + strand, within AZOBR_RS25855at 856.407 kb on + strand, within AZOBR_RS25855at 856.425 kb on + strand, within AZOBR_RS25855at 856.425 kb on + strand, within AZOBR_RS25855at 856.425 kb on + strand, within AZOBR_RS25855at 856.425 kb on + strand, within AZOBR_RS25855at 856.426 kb on - strand, within AZOBR_RS25855at 856.515 kb on + strand, within AZOBR_RS25855at 856.515 kb on + strand, within AZOBR_RS25855at 856.516 kb on - strand, within AZOBR_RS25855at 856.559 kb on - strand, within AZOBR_RS25855at 856.559 kb on - strand, within AZOBR_RS25855at 856.611 kb on + strand, within AZOBR_RS25855at 856.611 kb on + strand, within AZOBR_RS25855at 856.611 kb on + strand, within AZOBR_RS25855at 856.611 kb on + strand, within AZOBR_RS25855at 856.611 kb on + strand, within AZOBR_RS25855at 856.611 kb on + strand, within AZOBR_RS25855at 857.049 kb on + strandat 857.049 kb on + strandat 857.049 kb on + strandat 857.049 kb on + strandat 857.049 kb on + strandat 857.049 kb on + strandat 857.049 kb on + strandat 857.050 kb on - strandat 857.050 kb on - strandat 857.627 kb on + strandat 857.627 kb on + strandat 857.628 kb on - strandat 858.012 kb on - strandat 858.017 kb on + strandat 858.083 kb on + strand, within AZOBR_RS25865at 858.084 kb on - strand, within AZOBR_RS25865at 858.101 kb on + strand, within AZOBR_RS25865at 858.101 kb on + strand, within AZOBR_RS25865

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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853,264 + AZOBR_RS25850 0.80 +1.1
853,384 + AZOBR_RS25850 0.86 +0.2
853,384 + AZOBR_RS25850 0.86 +1.1
853,385 - AZOBR_RS25850 0.86 +0.6
853,385 - AZOBR_RS25850 0.86 +0.8
853,385 - AZOBR_RS25850 0.86 +0.7
853,666 + -0.4
853,666 + -1.2
853,666 + +0.1
853,666 + -0.1
853,666 + +2.1
853,666 + +1.1
853,667 - -0.8
853,667 - +0.0
853,667 - +2.9
853,667 - +0.4
853,667 - +0.2
853,667 - -0.1
853,675 + -0.7
853,676 - -2.5
853,676 - -0.3
853,835 - -0.1
853,836 + +0.4
853,836 + +0.5
853,836 + -0.1
853,836 + +0.8
853,836 + -0.2
853,837 - +0.5
853,837 - +0.2
853,837 - +0.0
853,837 - +0.4
853,837 - -0.3
854,025 + +0.7
854,025 + +0.0
855,889 + AZOBR_RS25855 0.60 -0.9
855,889 + AZOBR_RS25855 0.60 +0.6
855,889 + AZOBR_RS25855 0.60 -0.1
855,889 + AZOBR_RS25855 0.60 -0.5
855,890 - AZOBR_RS25855 0.60 -1.0
855,890 - AZOBR_RS25855 0.60 +0.0
855,890 - AZOBR_RS25855 0.60 -0.3
855,891 + AZOBR_RS25855 0.60 -1.3
855,891 + AZOBR_RS25855 0.60 -1.2
855,891 + AZOBR_RS25855 0.60 -2.3
855,891 + AZOBR_RS25855 0.60 +0.4
855,891 + AZOBR_RS25855 0.60 -0.7
855,891 + AZOBR_RS25855 0.60 -1.3
855,891 + AZOBR_RS25855 0.60 +0.1
855,892 - AZOBR_RS25855 0.60 -1.0
855,892 - AZOBR_RS25855 0.60 -0.5
855,892 - AZOBR_RS25855 0.60 +0.1
855,892 - AZOBR_RS25855 0.60 +4.1
855,892 - AZOBR_RS25855 0.60 +2.6
855,892 - AZOBR_RS25855 0.60 -0.4
855,892 - AZOBR_RS25855 0.60 -0.5
856,204 + AZOBR_RS25855 0.68 -0.9
856,209 + AZOBR_RS25855 0.68 -0.0
856,407 + AZOBR_RS25855 0.74 -1.5
856,425 + AZOBR_RS25855 0.74 -1.6
856,425 + AZOBR_RS25855 0.74 -2.9
856,425 + AZOBR_RS25855 0.74 +0.7
856,425 + AZOBR_RS25855 0.74 -1.3
856,426 - AZOBR_RS25855 0.74 +0.1
856,515 + AZOBR_RS25855 0.77 -1.1
856,515 + AZOBR_RS25855 0.77 +0.3
856,516 - AZOBR_RS25855 0.77 -0.5
856,559 - AZOBR_RS25855 0.78 -0.5
856,559 - AZOBR_RS25855 0.78 -0.4
856,611 + AZOBR_RS25855 0.79 +1.1
856,611 + AZOBR_RS25855 0.79 -1.7
856,611 + AZOBR_RS25855 0.79 -0.3
856,611 + AZOBR_RS25855 0.79 +1.4
856,611 + AZOBR_RS25855 0.79 -2.1
856,611 + AZOBR_RS25855 0.79 +0.4
857,049 + -1.9
857,049 + -2.9
857,049 + +2.2
857,049 + +0.8
857,049 + +0.3
857,049 + +0.1
857,049 + +0.6
857,050 - -0.5
857,050 - -0.4
857,627 + -1.2
857,627 + +1.4
857,628 - -0.9
858,012 - +0.5
858,017 + -2.8
858,083 + AZOBR_RS25865 0.18 -0.0
858,084 - AZOBR_RS25865 0.18 +1.1
858,101 + AZOBR_RS25865 0.21 +0.1
858,101 + AZOBR_RS25865 0.21 -0.1

Or see this region's nucleotide sequence