Experiment: 2-Furfuraldehyde 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24070 and AZOBR_RS24075 are separated by 72 nucleotides AZOBR_RS24075 and AZOBR_RS24080 are separated by 116 nucleotides AZOBR_RS24080 and AZOBR_RS24085 are separated by 121 nucleotides
AZOBR_RS24070: AZOBR_RS24070 - acetyl-CoA hydrolase, at 438,986 to 440,479
_RS24070
AZOBR_RS24075: AZOBR_RS24075 - hypothetical protein, at 440,552 to 440,905
_RS24075
AZOBR_RS24080: AZOBR_RS24080 - methyl-accepting chemotaxis protein, at 441,022 to 442,725
_RS24080
AZOBR_RS24085: AZOBR_RS24085 - AMP-dependent synthetase, at 442,847 to 444,376
_RS24085
Position (kb) 441
442
443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.372 kb on + strand at 440.706 kb on + strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.793 kb on + strand, within AZOBR_RS24075 at 440.941 kb on + strand at 440.941 kb on + strand at 442.136 kb on + strand, within AZOBR_RS24080 at 442.137 kb on - strand, within AZOBR_RS24080 at 442.397 kb on + strand, within AZOBR_RS24080 at 442.690 kb on + strand at 442.690 kb on + strand at 442.796 kb on - strand at 442.877 kb on + strand at 442.878 kb on - strand at 442.951 kb on - strand at 443.469 kb on + strand, within AZOBR_RS24085 at 443.640 kb on + strand, within AZOBR_RS24085
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol% remove 440,073 - AZOBR_RS24070 0.73 -1.5 440,073 - AZOBR_RS24070 0.73 -0.4 440,073 - AZOBR_RS24070 0.73 +0.4 440,073 - AZOBR_RS24070 0.73 -2.5 440,372 + +0.3 440,706 + AZOBR_RS24075 0.44 +0.2 440,707 - AZOBR_RS24075 0.44 -4.7 440,707 - AZOBR_RS24075 0.44 -1.4 440,793 + AZOBR_RS24075 0.68 -2.1 440,941 + +1.1 440,941 + -0.8 442,136 + AZOBR_RS24080 0.65 -0.3 442,137 - AZOBR_RS24080 0.65 -0.4 442,397 + AZOBR_RS24080 0.81 -0.6 442,690 + +1.1 442,690 + -0.2 442,796 - +0.3 442,877 + -0.1 442,878 - +1.5 442,951 - -2.5 443,469 + AZOBR_RS24085 0.41 +0.1 443,640 + AZOBR_RS24085 0.52 -0.5
Or see this region's nucleotide sequence