Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20890

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20885 and AZOBR_RS20890 are separated by 169 nucleotidesAZOBR_RS20890 and AZOBR_RS20895 overlap by 1 nucleotidesAZOBR_RS20895 and AZOBR_RS20900 are separated by 593 nucleotides AZOBR_RS20885: AZOBR_RS20885 - LysR family transcriptional regulator, at 1,446,221 to 1,447,081 _RS20885 AZOBR_RS20890: AZOBR_RS20890 - aminoglycoside N(6')-acetyltransferase, at 1,447,251 to 1,447,703 _RS20890 AZOBR_RS20895: AZOBR_RS20895 - hypothetical protein, at 1,447,703 to 1,447,909 _RS20895 AZOBR_RS20900: AZOBR_RS20900 - hypothetical protein, at 1,448,503 to 1,448,712 _RS20900 Position (kb) 1447 1448Strain fitness (log2 ratio) -2 -1 0 1 2at 1446.530 kb on + strand, within AZOBR_RS20885at 1446.530 kb on + strand, within AZOBR_RS20885at 1446.569 kb on + strand, within AZOBR_RS20885at 1446.570 kb on - strand, within AZOBR_RS20885at 1446.713 kb on + strand, within AZOBR_RS20885at 1446.744 kb on - strand, within AZOBR_RS20885at 1447.169 kb on - strandat 1447.170 kb on + strandat 1447.171 kb on - strandat 1447.171 kb on - strandat 1447.179 kb on + strandat 1447.180 kb on - strandat 1447.180 kb on - strandat 1447.180 kb on - strandat 1447.414 kb on + strand, within AZOBR_RS20890at 1447.415 kb on - strand, within AZOBR_RS20890at 1447.452 kb on + strand, within AZOBR_RS20890at 1447.452 kb on + strand, within AZOBR_RS20890at 1447.453 kb on - strand, within AZOBR_RS20890at 1447.453 kb on - strand, within AZOBR_RS20890at 1447.500 kb on + strand, within AZOBR_RS20890at 1447.500 kb on + strand, within AZOBR_RS20890at 1447.500 kb on + strand, within AZOBR_RS20890at 1447.500 kb on + strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.501 kb on - strand, within AZOBR_RS20890at 1447.990 kb on + strandat 1447.990 kb on + strandat 1447.991 kb on - strandat 1447.999 kb on - strandat 1448.201 kb on + strandat 1448.241 kb on - strandat 1448.242 kb on + strandat 1448.336 kb on - strandat 1448.409 kb on + strandat 1448.439 kb on + strandat 1448.440 kb on - strandat 1448.607 kb on - strand, within AZOBR_RS20900

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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1,446,530 + AZOBR_RS20885 0.36 -0.1
1,446,530 + AZOBR_RS20885 0.36 -0.1
1,446,569 + AZOBR_RS20885 0.40 -0.2
1,446,570 - AZOBR_RS20885 0.41 -0.4
1,446,713 + AZOBR_RS20885 0.57 +0.4
1,446,744 - AZOBR_RS20885 0.61 -0.7
1,447,169 - +0.5
1,447,170 + +0.3
1,447,171 - +0.1
1,447,171 - +0.3
1,447,179 + +0.2
1,447,180 - -1.7
1,447,180 - -1.9
1,447,180 - -2.6
1,447,414 + AZOBR_RS20890 0.36 +1.0
1,447,415 - AZOBR_RS20890 0.36 +0.1
1,447,452 + AZOBR_RS20890 0.44 +0.3
1,447,452 + AZOBR_RS20890 0.44 +0.2
1,447,453 - AZOBR_RS20890 0.45 +0.3
1,447,453 - AZOBR_RS20890 0.45 -0.4
1,447,500 + AZOBR_RS20890 0.55 -1.3
1,447,500 + AZOBR_RS20890 0.55 +1.0
1,447,500 + AZOBR_RS20890 0.55 +0.1
1,447,500 + AZOBR_RS20890 0.55 +0.3
1,447,501 - AZOBR_RS20890 0.55 -0.7
1,447,501 - AZOBR_RS20890 0.55 +0.8
1,447,501 - AZOBR_RS20890 0.55 +0.9
1,447,501 - AZOBR_RS20890 0.55 +0.1
1,447,501 - AZOBR_RS20890 0.55 -0.2
1,447,501 - AZOBR_RS20890 0.55 +0.8
1,447,501 - AZOBR_RS20890 0.55 +1.8
1,447,501 - AZOBR_RS20890 0.55 -0.2
1,447,990 + +1.0
1,447,990 + +0.1
1,447,991 - +0.5
1,447,999 - +1.8
1,448,201 + +0.1
1,448,241 - +0.2
1,448,242 + +1.1
1,448,336 - +0.5
1,448,409 + -0.7
1,448,439 + -2.1
1,448,440 - -0.5
1,448,607 - AZOBR_RS20900 0.50 -0.5

Or see this region's nucleotide sequence