Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14490

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14480 and AZOBR_RS14485 overlap by 4 nucleotidesAZOBR_RS14485 and AZOBR_RS14490 are separated by 91 nucleotidesAZOBR_RS14490 and AZOBR_RS14495 are separated by 72 nucleotidesAZOBR_RS14495 and AZOBR_RS14500 are separated by 176 nucleotides AZOBR_RS14480: AZOBR_RS14480 - hypothetical protein, at 20,369 to 20,905 _RS14480 AZOBR_RS14485: AZOBR_RS14485 - inositol-1-monophosphatase, at 20,902 to 21,714 _RS14485 AZOBR_RS14490: AZOBR_RS14490 - hypothetical protein, at 21,806 to 22,114 _RS14490 AZOBR_RS14495: AZOBR_RS14495 - hypothetical protein, at 22,187 to 22,606 _RS14495 AZOBR_RS14500: AZOBR_RS14500 - nucleoside triphosphate pyrophosphohydrolase, at 22,783 to 23,592 _RS14500 Position (kb) 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.287 kb on - strand, within AZOBR_RS14485at 21.499 kb on + strand, within AZOBR_RS14485at 21.538 kb on + strand, within AZOBR_RS14485at 21.539 kb on - strand, within AZOBR_RS14485at 21.602 kb on - strand, within AZOBR_RS14485at 21.628 kb on + strand, within AZOBR_RS14485at 21.794 kb on + strandat 21.794 kb on + strandat 21.794 kb on + strandat 21.794 kb on + strandat 21.794 kb on + strandat 21.794 kb on + strandat 21.795 kb on - strandat 21.795 kb on - strandat 21.796 kb on + strandat 21.797 kb on - strandat 21.797 kb on - strandat 22.201 kb on + strandat 22.201 kb on + strandat 22.202 kb on - strandat 22.427 kb on + strand, within AZOBR_RS14495at 22.457 kb on + strand, within AZOBR_RS14495at 22.457 kb on + strand, within AZOBR_RS14495at 22.458 kb on - strand, within AZOBR_RS14495at 22.739 kb on - strandat 22.870 kb on + strand, within AZOBR_RS14500at 22.870 kb on + strand, within AZOBR_RS14500at 22.871 kb on - strand, within AZOBR_RS14500at 22.906 kb on + strand, within AZOBR_RS14500at 22.906 kb on + strand, within AZOBR_RS14500at 22.907 kb on - strand, within AZOBR_RS14500at 22.907 kb on - strand, within AZOBR_RS14500at 22.987 kb on + strand, within AZOBR_RS14500at 22.988 kb on - strand, within AZOBR_RS14500at 22.988 kb on - strand, within AZOBR_RS14500at 22.988 kb on - strand, within AZOBR_RS14500at 22.991 kb on - strand, within AZOBR_RS14500at 22.991 kb on - strand, within AZOBR_RS14500

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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21,287 - AZOBR_RS14485 0.47 -1.6
21,499 + AZOBR_RS14485 0.73 -0.2
21,538 + AZOBR_RS14485 0.78 +0.2
21,539 - AZOBR_RS14485 0.78 -0.0
21,602 - AZOBR_RS14485 0.86 -0.5
21,628 + AZOBR_RS14485 0.89 +0.5
21,794 + -0.7
21,794 + +0.4
21,794 + +0.1
21,794 + -0.7
21,794 + +0.2
21,794 + -0.0
21,795 - +0.6
21,795 - +0.8
21,796 + +0.1
21,797 - +0.3
21,797 - +0.0
22,201 + +0.6
22,201 + -1.8
22,202 - -1.7
22,427 + AZOBR_RS14495 0.57 +1.0
22,457 + AZOBR_RS14495 0.64 +0.6
22,457 + AZOBR_RS14495 0.64 -1.5
22,458 - AZOBR_RS14495 0.65 -0.4
22,739 - +0.6
22,870 + AZOBR_RS14500 0.11 -0.1
22,870 + AZOBR_RS14500 0.11 -2.8
22,871 - AZOBR_RS14500 0.11 +0.5
22,906 + AZOBR_RS14500 0.15 -0.2
22,906 + AZOBR_RS14500 0.15 -0.1
22,907 - AZOBR_RS14500 0.15 +0.2
22,907 - AZOBR_RS14500 0.15 -0.1
22,987 + AZOBR_RS14500 0.25 +2.4
22,988 - AZOBR_RS14500 0.25 +0.1
22,988 - AZOBR_RS14500 0.25 +0.8
22,988 - AZOBR_RS14500 0.25 -2.7
22,991 - AZOBR_RS14500 0.26 -0.6
22,991 - AZOBR_RS14500 0.26 +0.5

Or see this region's nucleotide sequence