Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14465

Experiment: 2-Furfuraldehyde 0.2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14455 and AZOBR_RS14460 overlap by 4 nucleotidesAZOBR_RS14460 and AZOBR_RS14465 are separated by 95 nucleotidesAZOBR_RS14465 and AZOBR_RS14470 overlap by 14 nucleotides AZOBR_RS14455: AZOBR_RS14455 - D-amino acid aminotransferase, at 16,606 to 17,469 _RS14455 AZOBR_RS14460: AZOBR_RS14460 - HAD family hydrolase, at 17,466 to 18,164 _RS14460 AZOBR_RS14465: AZOBR_RS14465 - RNA-binding protein Hfq, at 18,260 to 18,508 _RS14465 AZOBR_RS14470: AZOBR_RS14470 - GTPase HflX, at 18,495 to 19,820 _RS14470 Position (kb) 18 19Strain fitness (log2 ratio) -1 0 1 2 3at 17.443 kb on + strandat 17.524 kb on - strandat 17.709 kb on + strandat 17.710 kb on - strand, within AZOBR_RS14460at 18.043 kb on + strand, within AZOBR_RS14460at 18.046 kb on + strand, within AZOBR_RS14460at 18.162 kb on + strandat 18.216 kb on + strandat 18.871 kb on + strand, within AZOBR_RS14470

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.2 vol%
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17,443 + -0.9
17,524 - -0.9
17,709 + +3.2
17,710 - AZOBR_RS14460 0.35 -0.2
18,043 + AZOBR_RS14460 0.83 -1.1
18,046 + AZOBR_RS14460 0.83 -0.0
18,162 + +0.5
18,216 + +0.3
18,871 + AZOBR_RS14470 0.28 -1.1

Or see this region's nucleotide sequence